Y Dna Lineages in Brazil

Angela

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In terms of broad strokes, it's as expected. I don't know why, however, they did so little subclade resolution.

Male Lineages in Brazil: Intercontinental Admixture and Stratification of the European Background


http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152573

"The non-recombining nature of the Y chromosome and the well-established phylogeny of Y-specific Single Nucleotide Polymorphisms (Y-SNPs) make them useful for defining haplogroups with high geographical specificity; therefore, they are more apt than the Y-STRs to detect population stratification in admixed populations from diverse continental origins. Different Y-SNP typing strategies have been described to address issues of population history and movements within geographic territories of interest. In this study, we investigated a set of 41 Y-SNPs in 1217 unrelated males from the five Brazilian geopolitical regions, aiming to disclose the genetic structure of male lineages in the country. A population comparison based on pairwise FST genetic distances did not reveal statistically significant differences in haplogroup frequency distributions among populations from the different regions. The genetic differences observed among regions were, however, consistent with the colonization history of the country. The sample from the Northern region presented the highest Native American ancestry (8.4%), whereas the more pronounced African contribution could be observed in the Northeastern population (15.1%). The Central-Western and Southern samples showed the higher European contributions (95.7% and 93.6%, respectively). The Southeastern region presented significant European (86.1%) and African (12.0%) contributions. The subtyping of the most frequent European lineage in Brazil (R1b1a-M269) allowed differences in the genetic European background of the five Brazilian regions to be investigated for the first time.


Male Lineages in Brazil.png


The virtual wipe out of the Indian lineages is clear, but even the African lines are severely limited. This isn't the picture in North America, as we've discussed on other threads.

The paper also gets into trying to distinguish the y by area of settlement of the different European groups, i.e. Portuguese, Spanish, Italian, French, German. Given that the subclade resolution isn't very good I'd take those results with a a grain of salt.
 
they are investigating a rather recent and well-documented immigration event which has not been overrun by a more recent massive immigration event

it is logical to have history for once confirmed by present-day genetic distributions

there is e.g. Germanic, Slavic and Celtic DNA in Europe, and even some EEF, but to distinguish by country seems tricky as many movements andreplacements inside Europe happened after the formation of these DNA + there probably is some founder effect from the colonisers inside Brasil
 

I can't find any discussion of that. The only thing they say is that they're using the samples of Palha et al, and in that paper they say the following:

"A set of 23 Y chromosome STRs was investigated in a sample of admixed Brazilians from 17 different cities (Fig. 1)"

https://scholar.google.com/scholar_lookup?title=Disclosing+the+genetic+structure+of+Brazil+through+analysis+of+male+lineages+with+highly+discriminating+haplotypes&author=Palha&publication_year=2012
 
they are investigating a rather recent and well-documented immigration event which has not been overrun by a more recent massive immigration event

it is logical to have history for once confirmed by present-day genetic distributions

there is e.g. Germanic, Slavic and Celtic DNA in Europe, and even some EEF, but to distinguish by country seems tricky as many movements andreplacements inside Europe happened after the formation of these DNA + there probably is some founder effect from the colonisers inside Brasil

Yes, this is quite interesting, and you are right that identifying specific countries of origin is non-trivial for descendants of emigrants, even with further downstream data. SNP's are much more useful for identifying a likely medieval or ancient ethnic origin than they are identifying what modern nation-state a person's ancestor came from. For example, if someone gets an R-L21 result, that means that their paternal ancestor was most likely a Celt, but it doesn't indicate whether that ancestor came out of Ireland, Scotland, Wales, France, or even Spain. For that, you probably need STR data or written documentation.
 

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