Recent content by Jalisciense

The update was bad for me, many regions that don't make sense, my spanish ancestry is super low and they overestimated by a lot my Indigenous American and Sephardic Jewish percentages. I have seen many results (Family, friends, Reddit and Facebook) and I could say the update for us hispanic...

If I put any other basal population other than Mbuti, I can't run qpAdm, so how did you do to put Ethiopia_4500BP, bro?

I didn't know that, thanks for let us know bro, from now on I'll use qpWave to model pops in 1-way. The 2-way, 3-way....and so on will be modeled just in qpAdm.

I made it in the Classic ADMIXTOOLS, the process is actually different from the ADMIXTOOLS 2 but I was able to figured out how to do it and run it in the classical one. This is a test one tho but it was able to be statistically robust (p-value/taildiff ≥0.05): qpWave: parameter file: parqpWave...

How did you make the graph bro? What program did you use?

Can you pass me the prompt? Because the pie chart that chatgpt is giving me looks different lol

What program do you use to make them?

Yes, we have already the Dzudzuana sample called Georgia_Dzudzuana_UP.

"21.2% ± 9.04% Dzudzuana (not including the Dzudzuana ANF had)" The Georgia Kotias is not Dzudzuana but Caucasus Hunter-Gatherer.

As usual good job and great answers! I have some questions, What is maxmiss and how to use it in qpAdm AdmixTools1? And what about that too? "F2 Extraction: extract_f2() creates a precomputed f2 dataset from your raw genotype data, using a lenient setting (maxmiss = 1) to retain as many SNPs...

The model that is about England MIA and Egypt didn't pass (The p-value/taildiff has to be at least 0.05) so statistically is a fail and must be redone or discarded.

Yeah, I didn't like the models they gave to you tbh. Either way, you won't know until you try, I used to think the same thing and even I asked in this forum if anyone could modelling me in qpAdm; but I searched, I read, I asked for help and I learned. I proved that is possible, If I could do...

Ok, I usually don't like to give an opinion because people usually get mad because they feel you are attacking their business, but since you are a user fellow and asking a question I could say something about it. In this months, I have gathered the information that I could about the use of...

I haven't installed AdmixTools2 and I'm not an expert, but I see you have double "v54.1.p1_1240K_public" in your directory route. Try this: prefix = "C:/Users/spart/Downloads/meyman/data/v54.1.p1_1240K_public" my_f2_dir = "C:/Users/spart/Downloads/meyman/mdir" library(admixtools)...

"It's good practice not to mix .DG/.SG samples with non .DG/.SG, because there is inherent bias towards the first, if you absolutely need to do this, you can adjust the command by adding: adjust_pseudohaploid = FALSE, at the end of the command." If in AdmixTools2 is adjust_pseudohaploid =...