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Yeah, they have written very horrible things about us (Mestizos).

We could be a team already bro, you explain how to install all these things and I run them 😂

Thanks for everything bro, your help was essential for me to be able to do all this; you know a lot about qpAdm!! I follow your advice and I could do the list subdataset with AADR v62.0_1240k, the issue is right pops that used to work in HO don't work anymore with the 1240k lol so I'll have to...

I see, well, I usually wouldn't mind if I have to do it again, the problem is that I need more RAM each time, so I'm afraid that I couldn't merge any other raw data of my family because of that, so I prefer merge the ones that I haven't done so in case of. I asked to chatgpt and it told me that...

What kind of analysis can affect and which ones cannot affect if I didn't change the 1 to 2? I just finished of merging my dad's, grandpa's and a friend's raw datas, so I'd like to know.

Third number...so it would be like this?: Lopez Sofia 0 0 2 1 The -9 will be always changed by 1 then? Isee, it's good to know about control and target then.

It's working now, thanks bro.

I see, well, I would see when I do it, but it is more clear now, and ok, if I can I would test with the highest quality samples 1240k. Just a few questions if you do not mind: 1. How I change my name and why is "control"? When I try to change it to my real name (I will just call Smith John...

I used individuals that don't end in .HO but .DG, .SG, .SG, etc...so the samples I used have the same snp that the sames in 1240k? Just the ones that end in .HO have 500k of snp? Thanks, so when I merged them I have to add the parameter poplistname: poplist_keep.txt again in the...

Thanks bro, you are very nice. But I finally managed to merge my data to AADR!!! I download the v62.0_HO files and using the max of RAM and processors to my virtual machine, this time the system was able to "stayed alive" and not be "killed" lol So thank you so much for your help bro, you...

I used the max I could provide to my virtual machine before it crashes (6451 MB of RAM out of 8000 MB and 6 processors out of 8) I always thought the HO set is heavier because there were more samples than the v normal ones lol BtW is it necessary to download the AADR.anno file? or I can just...

It seems pretty good bro! I really like how it seems, congrats!

Thank bro, how is the command --keep-allele-order? Where do I put it? (position) About the mergeit file, you have it like this?: geno1: mydata.geno snp1: mydata.snp ind1: mydata.ind geno2: v62.0_1240k_public.geno snp2: v62.0_1240k_public.snp ind2: v62.0_1240k_public.ind outputformat...

Hey bro, a question, when you merged your data with AADR, did you use the 9 original parameters? Or did you add more?

Ok, adding the 2 parameters you recommended:

I reconverted it, I did not modify anything (I even did not change the name of the file). I followed all the steps and when I tried to merged, appeared like this:

This is useful, thanks. But why do you need the DOS session? And the Wsl that are you using is the default Ubuntu distribution? Or did you change to another Linux? Btw what is the characteristics of your computer or laptop (How much RAM you have and free, how many computer processors, what...

ok, so here we go: I used the link of free DNA file converter: https://tendna.com/en/dna-converter The option of raw data was from AncestryDNA to 23andMe format: Then I strip my AncestryDNA header up to rsid chromosome position allele1 allele 2: And now it looked like this: (I sent...

I edited my post. But I did what you told me and it didn't work with this command: plink --23file 23andme.txt smith john--out mydata I run it: jalisciense@vbox:~> cd bin jalisciense@vbox:~/bin> plink --23file 23andme.txt smith john--out mydata PLINK v1.9.0-b.7.7 64-bit (22 Oct 2024)...

Edit: I think you mean the command like this? plink --23file 23andme.txt 001 001--out mydata Because I run it and I got this: jalisciense@vbox:~/bin> plink --23file 23andme.txt 001 001--out mydata PLINK v1.9.0-b.7.7 64-bit (22 Oct 2024) cog-genomics.org/plink/1.9/ (C) 2005-2024 Shaun...