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Is DNAGenics worth to be buy it?

I downloaded my raw data and strip my AncestryDNA header up to rsid chromosome position allele1 allele 2: And it stayed that way: Then I sent it to my virtual machine (Where I have AdmixTools) and I used this command to convert it to 23andMe format: awk 'BEGIN {FS="\t"};{print...

Ok! jalisciense@vbox:~> cd bin jalisciense@vbox:~/bin> mergeit -p merge_param.par parameter file: merge_param.par geno1: v62.0_1240k_public.geno snp1: v62.0_1240k_public.snp ind1: v62.0_1240k_public.ind geno2: mydata.geno snp2: mydata.snp ind2: mydata.ind genooutfilename...

I changed the -9 to 1 FAM001 ID001 0 0 1 1 And I run it: jalisciense@vbox:~> cd bin jalisciense@vbox:~/bin> convertf -p par.PACKEDPED.PACKEDANCESTRYMAP parameter file: par.PACKEDPED.PACKEDANCESTRYMAP genotypename: mydata.bed snpname: mydata.bim indivname: mydata.fam outputformat...

it was that package ^ Or did I install it wrong? Then I copied the executables in EIG-master bin folder to the bin folder: Then I convert mydata plink files to PACKEDANCESTRYMAP: jalisciense@vbox:~> cd bin jalisciense@vbox:~/bin> convertf -p par.PACKEDPED.PACKEDANCESTRYMAP parameter...

As you see bro, I converted them to PackedAncestryMap, I did it again, this time I downloaded and installed this Eigentools (The one you recommended me): https://github.com/DReichLab/EIG And I run it: jalisciense@vbox:~> cd Downloads jalisciense@vbox:~/Downloads> ls AdmixTools EIG-master...

Thanks for the encouragement bro, but it has passed 4 hours, so I'm losing the patience, besides I'm tired and sleepy lol I downloaded the AADR v62_1240k not the HO version btw. I'd give some info about my laptop: I'm using Linux (OpenSuse 15.6) in a virtual machine/box, and I gave it 6100 MB...

How long does it take to convert AADR to Plink? With me, like 10 minutes had passed and it hadn't finished, so I stopped the processing because I thought it had a kind of error or something...

jalisciense@vbox:~/bin> mergeit -p merge_param.par parameter file: merge_param.par geno1: v62.0_1240k_public.geno snp1: v62.0_1240k_public.snp ind1: v62.0_1240k_public.ind geno2: mydata.geno snp2: mydata.snp ind2: mydata.ind genooutfilename: mydata_merged_with_1240k.geno snpoutfilename...

The conversion of AADR to "Plink" was taking so long, so I tried instead convert my .bed, .bim and .fam files of mydata to PackedAncestryMap and they were converted successfully to .geno, .snp and .ind with a file named par.PACKEDPED.PACKEDANCESTRYMAP with this inside: genotypename...

I did what you told me in this post yours ^ (I'm still using AdmixTools1 btw). And I used the command: convertf -p par.EIGENSTRAT.PED Then I got this: jalisciense@vbox:~> cd bin jalisciense@vbox:~/bin> convertf -p par.EIGENSTRAT.PED parameter file: par.EIGENSTRAT.PED genotypename...

Ok! I'll have to update it then. Btw maybe a dumb question bro, but it could be possible to merge a raw data to AADR if you just download Plink and the AADR without having to install any AdmixTools?

Nice bro, thanks! I asked because I read here somewhere that wasn't sure if it'd work in a newer R studio version, but you confirmed that It can.

Thanks for the good reply bro. I think I'm going to install AdmixTools2 too, do you know if I could do if my current R studio v 4.3.3? Or does it have to be a particular version? And what about R tools? Can the newest version be downloaded?

Thanks bro, when I have a chance I'll try it, but I have a question. Are those the steps where users got a massive geno document x4 size when convert back to Eigenstrat from Plink? And people reporting problems and being not able to do it, so they prefer move to AdmixTools2? That's way you...

Do you mean this? https://github.com/DReichLab/EIG Because the first time I downloaded this: https://github.com/DReichLab/AdmixTools

Then I used this command: ./plink -p par.EIGENSTRAT.PED But now I am getting this error: jalisciense@vbox:~/bin> ./plink -p par.EIGENSTRAT.PED PLINK v1.9.0-b.7.7 64-bit (22 Oct 2024) cog-genomics.org/plink/1.9/ © 2005-2024 Shaun Purcell, Christopher Chang GNU General Public License v3...

Now I am getting this error: Error: Failed to open v62.0_1240k_public.bed. It is the fault of this or what? (Type: Unknown)

I think I don't understand, is this right?: plink --23file AncestryCombined.txt --make-bed --out mydata

I tried to change it to the bin folder, but still no luck. All my .bed, .bim, .fam, .hh and .log files are in the bin folder: This is my bin folder: