You can do everything in https://usegalaxy.org/ online:) Just create free account there. It is especially useful for fastq academic files hosted on ENA when there are no bams only fastq files. But you can also upload there your wgs file. But I show first how to convert ancient samples from ENA...
You don't need to convert to VCF to have PLINK files.
Just use this command in PLINK on 23andme_txt file.
plink --23file your_raw.txt --chr 1-22 --make-bed --out newplinkfile
Flag --chr 1-22 is optional but you can have error regarding raw created from WGS about Y, X, MT rows and you don't...
I got best fit using sims made from K47 result using this script. But even better fit is here with Vbknethio K36 to G25 converter https://allelocator.ovh/K36horizontal.html
Also there is improved version of 2-way Oracle model (autor: ngansankhan) on Allelocator. Previous version of vbknethio was much slower...
https://allelocator.ovh/Oracle2way.html
On Allelocator is added new script (author: Nganasankhan) which allows creation G25 simulated coords from most Gedmatch / Admixture Studio calculators.
https://allelocator.ovh/simulatedg25.html
You can use results from any calc from the list below:
Eurogenes K13
Eurogenes K15...
https://www.biorxiv.org/content/10.1101/2022.03.13.483276v2.full
The Iron Age saw the expansion of Phoenician and Greek colonies across the Mediterranean and the rise of Carthage as the major maritime power of the region. These events were facilitated by the ease of long-distance travel...
https://culture.pl/en/article/7-most-polish-cities-outside-of-poland
First is Chicago (1,5 mln) ofc.
Second largest Polish city outside Poland is Curitiba in Brasil (about 400 000 with Polish roots).
Third Paris (300 000).
Fourth New York (218 000).
Fifth toronto (200 000).
I think better to show results of the run as:
Mycenaeans:
Greece_Minoan_Lassithi 81.7%
Iran_GanjDareh_N 5,2%
Russia_Samara_EBA_Yamnaya 12%
then
left:
results:
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