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plink

  1. Jovialis

    Admixtools PCA with PLINK & ChatGPT (Python Samurai)

    I have been experimenting creating PCAs using PLINK and ChatGPT's ability to utilize Python script. I use a dedicated GPT called Python Samurai, but the regular GPT 4.0 can do it as well. I wanted to exactly replicate the PCAs from studies, however, most of them use smartpca with Eigensoft...
  2. Jovialis

    Admixtools Academic qpAdm Model Replication

    With a big thanks to Maciamo for creating it, we are proud to announce the creation of the Admixtools sub-forum! This thread will be dedicated to the re-creation of qpadm models from academic papers. The object of the thread is to post FAM or Ind files that are modified to replicate a select...
    • Jovialis
    • Thread
    • aadr academic admixtools admixtools2 eigensoft eigenstrat fam model modeling plink qpadm reich lab
    • Replies: 3
    • Forum: Autosomal Genetics
  3. Jovialis

    Admixtools Utilizing AI for WGS30x FASTQ-Plink conversion & AADR Merge for Downstream Analysis in Admixtools2

    Please defer to this thread: https://www.eupedia.com/forum/threads/modern-fastq-to-eigenstrat-format-with-aadr-merge.45668/#post-687863
    • Jovialis
    • Thread
    • 23andme alignment bam bcftools bwa chatgpt conversion eigenstrat fastq indexing merging plink reich lab sam samtools vcf
    • Replies: 83
    • Forum: Autosomal Genetics
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