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Originally Posted by
Twilight
Interesting is there a reasoning that R1b is not decended from Cro-Magnon and more importantly with haplogroups belong to the Homo sub-species for example Cro-Magnons, Neanderthal, Java, etc?
The main rationale for suspecting that R1b is not related to the Cro-Magnons is that its European subclades, R1b-L11 and R1b-ht35, are too young (that is, not diverse enough) to date to the Cro-Magnons. Also, it has not been found in any ancient European samples before the latest Neolithic. Maciamo's R1b page is a good primer for alternate explanations of how R1b got to Europe (favoring the IE hypothesis in particular).
As for Cro-Magnons, Neanderthal, and Java... no extant haplogroups can be dated to the Neanderthals or homo erectus, so scratch those two off your list. "Cro-Magnon" is an unspecific term referring to a range of different Paleolithic Europeans. Although there may be some rare haplogroups that will turn out to also descend from Cro-Magnons (F of some sort, maybe?), the only modern Y-DNA haplogroup that I've seen dated and placed geographically to the Cro-Magnons with confidence is haplogroup I. Specifically, it dates well to Gravettian culture... Aurignacian is probably too early, although they're usually considered Cro-Magnon, as well.