DiscussionOur finding that Loschbour and all four Motala males whose haplogroups we could determine belong
to Y-haplogroup I is not entirely unexpected, as this clade of the human Y-chromosome phylogeny is
found almost exclusively in Europe6
, with much rarer occurrences elsewhere. Its sister clade
(haplogroup J) is thought to have a Near Eastern origin7
. It has been hypothesized that I was common
in pre-agricultural Europeans8
, and our study confirms this directly as it documents its presence in two
European hunter-gatherer groups from the period immediately antedating the Neolithic transition.
We cannot, at present, determine when Y chromosome haplogroup I entered Europe, although its
occurrence in two Mesolithic European hunter-gatherer populations (Loschbour and Motala) suggest
an old origin, potentially entering Europe during the Upper Paleolithic around 40,000 years ago.
It is tempting to speculate that haplogroup I might be the dominant European Y chromosome
haplogroup in Palaeolithic Europe, as the male counterpart of maternally inherited mitochondrial
haplogroup U (SI4). Y chromsome haplogroup I9 as well as mitochondrial haplogroup U were also
identified in Neolithic Europeans, and are found throughout Europe in present-day populations. Thus,
both maternally- and paternally-inherited genetic components of present-day Europeans may reflect a
history of major admixture: genetic contribution from both the hunter-gatherers and early farmers of
Europe. We further note that Y chromosome haplogroup I is scarce in the Near East today, with only
sporadic occurrences of this haplogroup in the North Caucasus (~3% in frequency)10, consistent with
very limited gene flow from Europe into this area.
The present-day frequency of haplogroup I in Europe is variable, with local maxima in Scandinavia2
and the western Balkans which might reflect more recent expansions. Our finding that Loschbour, a
Mesolithic west European, was M423+ contrasts with a previous suggestion11 that this lineage
diffused during the Neolithic from south-eastern Europe.
The absence of Y-haplogroup R1b in our two sample locations is striking given that it is, at present,
the major west European lineage. Importantly, however, it has not yet been found in ancient European
contexts prior to a Bell Beaker burial from Germany (2,800-2,000BC)12, while the related R1a lineage
has a first known occurrence in a Corded Ware burial also from Germany (2,600BC)13. This casts
doubt on early suggestions associating these haplogroups with Paleolithic Europeans14, and is more
consistent with their Neolithic entry into Europe at least in the case of R1b15, 16. More research is
needed to document the time and place of their earliest occurrence in Europe. Interestingly, the Mal’ta
boy belonged17 to haplogroup R* and we tentatively suggest that some haplogroup R bearers may be
responsible for the wider dissemination of Ancient North Eurasian ancestry into Europe, as their
haplogroup Q relatives may have plausibly done into the Americas17.
This work provides a first glimpse into the the pre-Neolithic Y chromosomes of Europe. Despite the
fact that our sample is limited to two locations and five male individuals, the results in this section are
consistent with haplogroup I representing a major pre-Neolithic European clade, and hint at
subsequent events during and after the Neolithic transition as important contributors to the Y
chromosomal variation of living Europeans.