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Thread: T subclade table based on 60K FtDNA samples

  1. #1
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    1 out of 2 members found this post helpful.

    T subclade table based on 60K FtDNA samples

    Code:
    ######################   T1a1   T1a2   T1a3    T1a    T1b     T1     T2      T    T-* !ISOGG  other   all
               Afghanistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    41
                   Albania   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    50
                   Algeria   1.32   0.00   0.00   1.99   0.00   0.00   0.00   0.00   3.31   0.00  96.69   151
                   Armenia   4.95   0.52   0.00   2.34   0.00   0.00   0.00   0.00   7.81   0.00  92.19   384
                   Austria   0.00   0.00   0.00   0.49   0.00   0.00   0.00   0.00   0.49   0.00  99.51   204
                Azerbaijan   1.79   0.00   0.00   0.89   0.00   0.00   0.00   0.00   2.68   0.00  97.32   112
                   Bahrain   1.69   0.00   1.12  19.66   0.00   0.00   0.00   0.00  25.28   2.81  74.72   178
                   Belarus   0.23   0.00   0.00   2.27   0.00   0.00   0.00   0.00   2.49   0.00  97.51   441
                   Belgium   0.00   0.75   0.00   0.75   0.00   0.00   0.00   0.00   1.50   0.00  98.50   267
    Bosnia and Herzegovina   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    94
                    Brazil   0.00   0.00   0.00   1.47   0.00   0.00   0.00   0.00   1.47   0.00  98.53    68
                  Bulgaria   0.00   0.00   0.00   0.95   0.00   0.00   0.00   0.00   0.95   0.00  99.05   316
                    Canada   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00   180
                     China   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    80
                   Croatia   0.00   0.98   0.00   0.98   0.00   0.00   0.00   0.00   1.96   0.00  98.04   102
            Czech Republic   0.88   0.00   0.00   0.88   0.00   0.00   0.00   0.00   1.75   0.00  98.25   228
                   Denmark   0.00   0.00   0.00   1.05   0.00   0.00   0.00   0.00   1.05   0.00  98.95   478
                     Egypt   1.67   1.11   0.00   4.44   0.00   0.00   0.00   0.00   7.78   0.56  92.22   180
                   England   0.08   0.08   0.00   0.46   0.00   0.00   0.00   0.00   0.66   0.03  99.35  6107
                   Estonia   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    64
                   Finland   0.00   0.04   0.00   0.07   0.00   0.00   0.00   0.00   0.11   0.00  99.89  2851
                    France   0.05   0.16   0.00   0.59   0.00   0.00   0.00   0.00   0.86   0.05  99.14  1852
                   Georgia   0.00   0.00   0.00   0.22   0.00   0.00   0.00   0.22   0.44   0.00  99.56   456
                   Germany   0.26   0.14   0.00   0.43   0.00   0.00   0.00   0.03   0.98   0.12  99.02  3458
                    Greece   0.38   0.00   0.00   1.91   0.00   0.00   0.00   0.00   2.29   0.00  97.71   523
                   Hungary   0.00   0.00   0.00   0.90   0.00   0.00   0.00   0.00   1.21   0.30  98.79   663
                     India   0.28   0.00   0.00   0.56   0.00   0.00   0.00   0.00   0.85   0.00  99.15   354
                      Iran   0.56   1.13   0.00   5.08   0.00   0.56   0.00   0.00   7.34   0.00  92.66   177
                      Iraq   3.19   0.10   0.82   2.06   0.00   0.00   0.00   0.00   6.38   0.21  93.62   972
                   Ireland   0.02   0.00   0.00   0.28   0.00   0.00   0.00   0.00   0.29   0.00  99.71  6113
                     Italy   0.64   0.36   0.00   2.49   0.00   0.00   0.00   0.00   3.56   0.07  96.44  1404
                     Japan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    86
                    Jordan   2.78   0.00   0.00   0.93   0.00   0.00   0.00   0.00   4.63   0.93  95.37   108
                Kazakhstan   0.00   0.00   0.00   0.26   0.00   0.00   0.00   0.00   0.26   0.00  99.74   385
                    Kuwait   3.54   0.39   2.16   1.96   0.00   0.00   0.00   0.00   9.23   1.18  90.77   509
                Kyrgyzstan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    51
                    Latvia   0.79   0.00   0.00   0.79   0.00   0.00   0.00   0.00   1.57   0.00  98.43   127
                   Lebanon   0.62   0.00   0.00   0.62   0.00   0.62   0.00   0.00   3.70   1.85  96.30   162
                     Libya   0.00   0.00   0.00   1.78   0.00   0.00   0.00   0.00   1.78   0.00  98.22   169
                 Lithuania   0.00   0.00   0.00   1.77   0.00   0.00   0.00   0.00   2.12   0.35  97.88   566
                    Mexico   0.00   0.00   0.00   1.40   0.00   0.00   0.00   0.00   1.87   0.47  98.13   214
                   Moldova   0.00   0.00   0.00   4.35   0.00   0.00   0.00   0.00   4.35   0.00  95.65    46
                   Morocco   0.99   0.00   0.00   3.96   0.00   0.00   0.00   0.00   4.95   0.00  95.05   101
               Netherlands   0.30   0.15   0.00   1.35   0.00   0.00   0.00   0.00   1.80   0.00  98.20   667
          Northern Ireland   0.18   0.18   0.00   0.18   0.00   0.00   0.00   0.00   0.55   0.00  99.45   543
                    Norway   0.00   0.06   0.00   0.00   0.00   0.00   0.00   0.00   0.06   0.00  99.94  1598
                      Oman   3.00   0.00   0.00   3.00   0.00   0.00   0.00   0.00   6.00   0.00  94.00   100
                  Pakistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    89
     Palestinian Territory   0.93   0.00   0.00   2.78   0.00   0.00   0.00   0.00   3.70   0.00  96.30   108
               Philippines   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    63
                    Poland   0.09   0.04   0.00   0.60   0.00   0.00   0.00   0.00   0.72   0.00  99.28  2345
                  Portugal   0.15   0.00   0.00   1.52   0.00   0.00   0.00   0.00   1.97   0.30  98.03   660
               Puerto Rico   0.00   0.00   0.00   1.49   0.00   0.00   0.00   0.00   1.49   0.00  98.51    67
                     Qatar   2.05   0.41   0.00   2.05   0.00   0.00   0.00   0.00   4.92   0.41  95.08   244
                   Romania   0.00   1.52   0.00   2.02   0.00   0.00   0.00   0.00   3.54   0.00  96.46   198
        Russian Federation   0.08   0.04   0.00   0.84   0.00   0.00   0.00   0.00   0.96   0.00  99.04  2609
              Saudi Arabia   1.68   1.54   0.11   4.34   0.00   0.00   0.00   0.00   8.24   0.57  91.76  2790
                  Scotland   0.02   0.00   0.00   0.04   0.00   0.00   0.00   0.00   0.08   0.02  99.92  4863
                    Serbia   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    94
                  Slovakia   0.93   0.00   0.00   0.93   0.00   0.00   0.00   0.00   1.86   0.00  98.14   215
                  Slovenia   1.41   0.00   0.00   0.00   0.00   0.00   0.00   0.00   1.41   0.00  98.59    71
                     Spain   0.73   0.00   0.00   1.69   0.00   0.00   0.00   0.00   2.42   0.00  97.58  1653
                     Sudan   2.12   0.00   0.00   3.70   0.00   0.00   0.00   0.00   6.35   0.53  93.65   189
                    Sweden   0.11   0.00   0.00   0.11   0.00   0.00   0.00   0.00   0.21   0.00  99.79  1864
               Switzerland   0.00   0.40   0.00   0.60   0.00   0.00   0.00   0.00   1.00   0.00  99.00   499
      Syrian Arab Republic   0.00   0.00   0.00   0.85   0.00   0.00   0.00   0.00   2.56   1.71  97.44   117
                   Tunisia   0.74   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.74   0.00  99.26   136
                    Turkey   2.18   0.50   0.17   2.35   0.00   0.00   0.00   0.17   5.71   0.34  94.29   595
                   Ukraine   0.60   0.10   0.00   1.81   0.00   0.00   0.00   0.00   2.52   0.00  97.48   993
      United Arab Emirates   4.69   0.20   0.00  11.02   0.00   0.00   0.00   0.00  16.94   1.02  83.06   490
            United Kingdom   0.16   0.04   0.00   0.71   0.00   0.00   0.00   0.00   0.90   0.00  99.10  2544
             United States   0.06   0.13   0.00   0.76   0.00   0.00   0.00   0.00   0.95   0.00  99.05  1583
                Uzbekistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    62
                     Wales   0.00   0.00   0.00   0.40   0.00   0.00   0.00   0.00   0.40   0.00  99.60   495
                     Yemen   0.94   0.00   0.00   0.63   0.00   0.00   0.00   0.00   2.52   0.94  97.48   318
                       ALL   0.43   0.16   0.04   1.06   0.00   0.00   0.00   0.00   1.80   0.11  98.21 60539
    Last edited by Expredel; 09-05-18 at 16:27.

  2. #2
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    Y-DNA haplogroup
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    MtDNA haplogroup
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    1 out of 1 members found this post helpful.
    Quote Originally Posted by Expredel View Post
    Code:
    ######################   T1a1   T1a2   T1a3    T1a    T1b     T1     T2      T    T-* !ISOGG  other   all
    Afghanistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    41
    Albania   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    50
    Algeria   1.32   0.00   0.00   1.99   0.00   0.00   0.00   0.00   3.31   0.00  96.69   151
    Armenia   4.95   0.00   0.00   2.34   0.00   0.00   0.00   0.00   7.81   0.00  92.19   384
    Austria   0.00   0.00   0.00   0.49   0.00   0.00   0.00   0.00   0.49   0.00  99.51   204
    Azerbaijan   1.79   0.00   0.00   0.89   0.00   0.00   0.00   0.00   2.68   0.00  97.32   112
    Bahrain   1.69   0.00   1.12  19.66   0.00   0.00   0.00   0.00  25.28   2.81  74.72   178
    Belarus   0.23   0.00   0.00   2.27   0.00   0.00   0.00   0.00   2.49   0.00  97.51   441
    Belgium   0.00   0.00   0.00   0.75   0.00   0.00   0.00   0.00   1.50   0.00  98.50   267
    Bosnia and Herzegovina   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    94
    Brazil   0.00   0.00   0.00   1.47   0.00   0.00   0.00   0.00   1.47   0.00  98.53    68
    Bulgaria   0.00   0.00   0.00   0.95   0.00   0.00   0.00   0.00   0.95   0.00  99.05   316
    Canada   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00   180
    China   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    80
    Croatia   0.00   0.00   0.00   0.98   0.00   0.00   0.00   0.00   1.96   0.00  98.04   102
    Czech Republic   0.88   0.00   0.00   0.88   0.00   0.00   0.00   0.00   1.75   0.00  98.25   228
    Denmark   0.00   0.00   0.00   1.05   0.00   0.00   0.00   0.00   1.05   0.00  98.95   478
    Egypt   1.67   0.00   0.00   4.44   0.00   0.00   0.00   0.00   7.78   0.56  92.22   180
    England   0.08   0.00   0.00   0.46   0.00   0.00   0.00   0.00   0.66   0.03  99.35  6107
    Estonia   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    64
    Finland   0.00   0.00   0.00   0.07   0.00   0.00   0.00   0.00   0.11   0.00  99.89  2851
    France   0.05   0.00   0.00   0.59   0.00   0.00   0.00   0.00   0.86   0.05  99.14  1852
    Georgia   0.00   0.00   0.00   0.22   0.00   0.00   0.00   0.22   0.44   0.00  99.56   456
    Germany   0.26   0.00   0.00   0.43   0.00   0.00   0.00   0.03   0.98   0.12  99.02  3458
    Greece   0.38   0.00   0.00   1.91   0.00   0.00   0.00   0.00   2.29   0.00  97.71   523
    Hungary   0.00   0.00   0.00   0.90   0.00   0.00   0.00   0.00   1.21   0.30  98.79   663
    India   0.28   0.00   0.00   0.56   0.00   0.00   0.00   0.00   0.85   0.00  99.15   354
    Iran   0.56   0.00   0.00   5.08   0.00   0.56   0.00   0.00   7.34   0.00  92.66   177
    Iraq   3.19   0.00   0.82   2.06   0.00   0.00   0.00   0.00   6.38   0.21  93.62   972
    Ireland   0.02   0.00   0.00   0.28   0.00   0.00   0.00   0.00   0.29   0.00  99.71  6113
    Italy   0.64   0.00   0.00   2.49   0.00   0.00   0.00   0.00   3.56   0.07  96.44  1404
    Japan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    86
    Jordan   2.78   0.00   0.00   0.93   0.00   0.00   0.00   0.00   4.63   0.93  95.37   108
    Kazakhstan   0.00   0.00   0.00   0.26   0.00   0.00   0.00   0.00   0.26   0.00  99.74   385
    Kuwait   3.54   0.00   2.16   1.96   0.00   0.00   0.00   0.00   9.23   1.18  90.77   509
    Kyrgyzstan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    51
    Latvia   0.79   0.00   0.00   0.79   0.00   0.00   0.00   0.00   1.57   0.00  98.43   127
    Lebanon   0.62   0.00   0.00   0.62   0.00   0.62   0.00   0.00   3.70   1.85  96.30   162
    Libya   0.00   0.00   0.00   1.78   0.00   0.00   0.00   0.00   1.78   0.00  98.22   169
    Lithuania   0.00   0.00   0.00   1.77   0.00   0.00   0.00   0.00   2.12   0.35  97.88   566
    Mexico   0.00   0.00   0.00   1.40   0.00   0.00   0.00   0.00   1.87   0.47  98.13   214
    Moldova   0.00   0.00   0.00   4.35   0.00   0.00   0.00   0.00   4.35   0.00  95.65    46
    Morocco   0.99   0.00   0.00   3.96   0.00   0.00   0.00   0.00   4.95   0.00  95.05   101
    Netherlands   0.30   0.00   0.00   1.35   0.00   0.00   0.00   0.00   1.80   0.00  98.20   667
    Northern Ireland   0.18   0.00   0.00   0.18   0.00   0.00   0.00   0.00   0.55   0.00  99.45   543
    Norway   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.06   0.00  99.94  1598
    Oman   3.00   0.00   0.00   3.00   0.00   0.00   0.00   0.00   6.00   0.00  94.00   100
    Pakistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    89
    Palestinian Territory   0.93   0.00   0.00   2.78   0.00   0.00   0.00   0.00   3.70   0.00  96.30   108
    Philippines   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    63
    Poland   0.09   0.00   0.00   0.60   0.00   0.00   0.00   0.00   0.72   0.00  99.28  2345
    Portugal   0.15   0.00   0.00   1.52   0.00   0.00   0.00   0.00   1.97   0.30  98.03   660
    Puerto Rico   0.00   0.00   0.00   1.49   0.00   0.00   0.00   0.00   1.49   0.00  98.51    67
    Qatar   2.05   0.00   0.00   2.05   0.00   0.00   0.00   0.00   4.92   0.41  95.08   244
    Romania   0.00   0.00   0.00   2.02   0.00   0.00   0.00   0.00   3.54   0.00  96.46   198
    Russian Federation   0.08   0.00   0.00   0.84   0.00   0.00   0.00   0.00   0.96   0.00  99.04  2609
    Saudi Arabia   1.68   0.00   0.11   4.34   0.00   0.00   0.00   0.00   8.24   0.57  91.76  2790
    Scotland   0.02   0.00   0.00   0.04   0.00   0.00   0.00   0.00   0.08   0.02  99.92  4863
    Serbia   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    94
    Slovakia   0.93   0.00   0.00   0.93   0.00   0.00   0.00   0.00   1.86   0.00  98.14   215
    Slovenia   1.41   0.00   0.00   0.00   0.00   0.00   0.00   0.00   1.41   0.00  98.59    71
    Spain   0.73   0.00   0.00   1.69   0.00   0.00   0.00   0.00   2.42   0.00  97.58  1653
    Sudan   2.12   0.00   0.00   3.70   0.00   0.00   0.00   0.00   6.35   0.53  93.65   189
    Sweden   0.11   0.00   0.00   0.11   0.00   0.00   0.00   0.00   0.21   0.00  99.79  1864
    Switzerland   0.00   0.00   0.00   0.60   0.00   0.00   0.00   0.00   1.00   0.00  99.00   499
    Syrian Arab Republic   0.00   0.00   0.00   0.85   0.00   0.00   0.00   0.00   2.56   1.71  97.44   117
    Tunisia   0.74   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.74   0.00  99.26   136
    Turkey   2.18   0.00   0.17   2.35   0.00   0.00   0.00   0.17   5.71   0.34  94.29   595
    Ukraine   0.60   0.00   0.00   1.81   0.00   0.00   0.00   0.00   2.52   0.00  97.48   993
    United Arab Emirates   4.69   0.00   0.00  11.02   0.00   0.00   0.00   0.00  16.94   1.02  83.06   490
    United Kingdom   0.16   0.00   0.00   0.71   0.00   0.00   0.00   0.00   0.90   0.00  99.10  2544
    United States   0.06   0.00   0.00   0.76   0.00   0.00   0.00   0.00   0.95   0.00  99.05  1583
    Uzbekistan   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00   0.00 100.00    62
    Wales   0.00   0.00   0.00   0.40   0.00   0.00   0.00   0.00   0.40   0.00  99.60   495
    Yemen   0.94   0.00   0.00   0.63   0.00   0.00   0.00   0.00   2.52   0.94  97.48   318
    ALL   0.43   0.00   0.04   1.06   0.00   0.00   0.00   0.00   1.79   0.11  98.21 60539
    strange that you could not find any ( zero) T1a2 samples when there are 2 pages in the ftdna project .......unsure where you get your data or else you erred somewhere.
    .
    You neither have any T2-PH110 branch listed
    .
    plus every T person came from haplogroup TL and one of its 30 SNP ..........as well as every T person share haplogroup K-M9.
    .
    to fix your data you need to either remove all T1a1, T1a2 and T1a3 and only use T1a or do not use T1a..........T1a is only created with SNP M70 , so all people in T1a1, T1a2 and T1a3 all have M70............you cannot double up the data
    có che un pòpoło no 'l defende pi ła só łéngua el xe prónto par èser s'ciavo

    when a people no longer dares to defend its language it is ripe for slavery.

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    You're correct about T1a2, there was a typo in the script messing up that table. I've updated it.

    I think T2-PH110 is simply absent.

    The data is not doubled up, looks like those listed as T1a used dna tests that didn't check any subclades, a dna test with a high false-negative rate, or a poor quality prediction algorithm.

    The only doubled up column is T-* which lists the sum of all other columns.

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    T2 are found in the T column but T1b is absolutly missed.

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    Y-DNA haplogroup
    T1a2 -Z19945..Jura
    MtDNA haplogroup
    H95a1 ..Pannoni

    Ethnic group
    North Alpine Italian
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    Quote Originally Posted by Expredel View Post
    You're correct about T1a2, there was a typo in the script messing up that table. I've updated it.

    I think T2-PH110 is simply absent.

    The data is not doubled up, looks like those listed as T1a used dna tests that didn't check any subclades, a dna test with a high false-negative rate, or a poor quality prediction algorithm.

    The only doubled up column is T-* which lists the sum of all other columns.
    Doubling of T1a is meant that since T1a is created by Snp M70 , then a lot of people stopped their DNA at this point and did not go further , ......if they went further then they would be in either T1a1, T1a2 or T1a3 and so not appear in T1a ..............my worry is if T1a1, T1a2 and T1a3 also appear as T1a in your data

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    1 out of 1 members found this post helpful.
    Quote Originally Posted by Sile View Post
    Doubling of T1a is meant that since T1a is created by Snp M70 , then a lot of people stopped their DNA at this point and did not go further , ......if they went further then they would be in either T1a1, T1a2 or T1a3 and so not appear in T1a ..............my worry is if T1a1, T1a2 and T1a3 also appear as T1a in your data
    No, if someone is listed as T1a1 they won't be listed as T1a.

    The reason T1a is high can also be due to SNP read errors in combination with poor prediction algorithms. According to one guy SNP read errors can be as high as 15% per SNP for Y-DNA.

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