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Thread: NEW! All Gedmatch calculators on Vahaduo ON-LINE

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    8 members found this post helpful.

    NEW! All Gedmatch calculators on Vahaduo ON-LINE

    http://vahaduo.genetics.ovh/



    Ok, maybe not all but those with oracles and without few less used



    Every calc has his own website with preinstaled oracle spreadsheet in SOURCE.

    Just copy your results from Gedmatch for every calculator and paste them as comma separated values (in one line) in TARGET. And at the beginning of components line, add your name with comma (like in example).





    DISTANCE tab shows your distance to spreadsheet references.



    SINGLE makes your oracles.

    You can remove some references from SOURCE and make targeted runs in SINGLE, when you reload page they will be again added.

    Also ADD DIST COL (ADC) function in SINGLE tab is very useful. It changes your results in some way.



    I think interesting benefit is making multiple runs for many results at once (MULTI option)





    ENJOY!

    K36 Ancestry Report, map and other ancestry tools
    www.lm-genetics.ovh


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    Quote Originally Posted by mlukas View Post
    http://vahaduo.genetics.ovh/



    Ok, maybe not all but those with oracles and without few less used



    Every calc has his own website with preinstaled oracle spreadsheet in SOURCE.

    Just copy your results from Gedmatch for every calculator and paste them as comma separated values (in one line) in TARGET. And at the beginning of components line, add your name with comma (like in example).





    DISTANCE tab shows your distance to spreadsheet references.



    SINGLE makes your oracles.

    You can remove some references from SOURCE and make targeted runs in SINGLE, when you reload page they will be again added.

    Also ADD DIST COL (ADC) function in SINGLE tab is very useful. It changes your results in some way.



    I think interesting benefit is making multiple runs for many results at once (MULTI option)





    ENJOY!

    Thank you Lucaz. It is always good to know new tools to make comparisons.

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    @mlukus

    Do you plan on updating your other calculators with new samples that have come out recently?
    There can be no covenants between men and lions

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    Quote Originally Posted by Jovialis View Post
    @mlukus

    Do you plan on updating your other calculators with new samples that have come out recently?
    Yes. I updated or added some refs in K15.

    Armenian_West
    Armenian_East
    Assyrian
    Azerbaijani
    Azeri_Dagestan
    Chechen
    Cypriot
    Georgian_Jew
    Georgian_Laz
    Greek_Trabzon
    Iranian_Bandari
    Iranian_Jew
    Iranian_Lur
    Iranian_Mazandarani
    Iranian_Persian
    Iraqi_Jew
    Jordanian
    Kabardin
    Kumyk
    Kurd
    Kurdish_Jew
    Lebanese_Christian
    Lezgin
    Palestinian
    Samaritan
    Syrian
    Turk_Meskhetian
    Turkish_Adana
    Turkish_Aydin
    Turkish_Balikesir
    Turkish_East
    Turkish_Kayseri
    Turkish_Trabzon

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    Thank you for this tool.

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    Quote Originally Posted by Jovialis View Post
    Thank you for this tool.
    Post results:)

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    Quote Originally Posted by mlukas View Post
    Yes. I updated or added some refs in K15.

    Armenian_West
    Armenian_East
    Assyrian
    Azerbaijani
    Azeri_Dagestan
    Chechen
    Cypriot
    Georgian_Jew
    Georgian_Laz
    Greek_Trabzon
    Iranian_Bandari
    Iranian_Jew
    Iranian_Lur
    Iranian_Mazandarani
    Iranian_Persian
    Iraqi_Jew
    Jordanian
    Kabardin
    Kumyk
    Kurd
    Kurdish_Jew
    Lebanese_Christian
    Lezgin
    Palestinian
    Samaritan
    Syrian
    Turk_Meskhetian
    Turkish_Adana
    Turkish_Aydin
    Turkish_Balikesir
    Turkish_East
    Turkish_Kayseri
    Turkish_Trabzon
    ... for update, I’m thinking the K36 Ancient Oracle with the new Etruscans, Latins, Romans, ...

    ... interesting :)

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    Quote Originally Posted by Salento View Post
    ... for update, I’m thinking the K36 Ancient Oracle with the new Etruscans, Latins, Romans, ...
    ... interesting :)
    That's actually what I was referring to as well. I'd like to see the new samples from the Antonio M. et al 2019 paper, added.

    It would be helpful to see the coordinates added, since other users have not been forthcoming with gedmatch kit numbers.

    Where are the heatmaps for R850 and R437???? Is there something that some people would rather not show????

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    Quote Originally Posted by Jovialis View Post
    That's actually what I was referring to as well. I'd like to see the new samples from the Antonio M. et al 2019 paper, added.
    It would be helpful to see the coordinates added, since other users have not been forthcoming with gedmatch kit numbers.
    Oh this. Ok. I think new Italian ancients are most needed indeed:)

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    Quote Originally Posted by mlukas View Post
    Oh this. Ok. I think new Italian ancients are most needed indeed:)
    Many thanks in advance :)

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    Quote Originally Posted by haidahai View Post
    Thanks mlukas. Can you specify the list of populations? Errors appears.
    Add your results in such format

    For example K3 result

    eurasian 97.1
    african 2.9
    East-asia 0

    for vahaduo:

    yournick,97.1,2.9,0

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    1 members found this post helpful.
    The results displayed on the “distance” tab are the same as those displayed in the “Oracle-4 Least-squares method, 1 population” of the GEDmatch calculators, with the difference that “vahaduo” displays 25 populations against 20 populations displayed by the GEDmatch calculators.
    In fact, on the "single" and "multi" tabs you can choose, by selecting the "ADD DIST COL" option, the number of populations that should be displayed (the options are NO, 0.25, 0.5, 1, 2). In this sense, the smaller the number chosen, the smaller the distance and the greater the number of populations displayed. Conversely, the higher the number chosen, the greater the distance and the smaller the number of populations displayed. The NO option causes oracle vahaduo to display over a dozen populations, which, IMO, makes the results much more speculative than those displayed in the “Oracle-4 Least-squares method, 4 populations” of the GEDmatch calculators. It's an interesting tool, though, and worth having fun with. I really liked the MDLP K11 tool because in “single” and “multi” modes, selecting NO under “ADD DIST COL” will display the percentages corresponding to neandertals and denisovans, which do not appear in the equivalent GEDmatch calculator in “Oracle-4 Least squares method, 4 populations ”. I am fascinated by these homo species.

    Below the results MDLP K11 GEDmatch and Vahaduo.



    Distance: 0.21710405



    Distance: 0.18807814



    Gedmatch.Com

    MDLP K11 Modern 4-Ancestors Oracle

    Least-squares method.

    Using 1 population approximation:
    1 Maros_BA @ 14.075006
    2 Vatya_MBA @ 15.678591
    3 Germany_BA @ 16.187374
    4 Germany_Bronze_Age @ 16.187374
    5 British_Celtic @ 20.002264
    6 Hungary_MBA @ 20.244434
    7 Hungary_BA @ 21.059147
    8 Alberstedt_LN @ 21.917471
    9 Bell_Beaker_Germany @ 22.091158
    10 British_IronAge @ 22.272991
    11 Hungary_IronAge @ 23.019497
    12 Halberstadt_LBA @ 23.490120
    13 Nordic_MN_B @ 23.821121
    14 Bell_Beaker_Czech @ 24.320074
    15 Swedish_LN @ 24.722479
    16 Nordic_BA @ 25.021477
    17 British_AngloSaxon @ 25.036400
    18 Bell_Beaker @ 25.735971
    19 Nordic_LN @ 25.988209
    20 BenzigerodeHeimburg_LN @ 26.021982

    Using 2 populations approximation:
    1 50% Baltic_LBA +50% GermanStuttgart_LBK @ 7.482058


    Using 3 populations approximation:
    1 50% Bell_Beaker_Czech +25% British_Roman +25% Remedello_BA @ 6.481935


    Using 4 populations approximation:
    ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++
    1 Greek_Neolithic + Armenia_LBA + Baltic_LBA + Swedish_LN @ 5.435480
    2 Greek_Neolithic + Armenia_Chalcolithic + Baltic_LBA + Swedish_LN @ 5.559091
    3 British_Roman + Nordic_MN_B + Nordic_MN_B + Remedello_BA @ 5.694587
    4 Greek_Neolithic + Armenia_MLBA + Baltic_LBA + Swedish_LN @ 5.746418
    5 British_Roman + Corded_Ware_Proto_Unetice_Poland + Nordic_MN_B + Remedello_BA @ 5.867424
    6 Baltic_LBA + Iran_Chalcolithic + Irish_LN + Irish_LN @ 5.907168
    7 British_Roman + Corded_Ware_Proto_Unetice_Poland + Europe_EN + Nordic_MN_B @ 5.976322
    8 Baltic_LBA + British_Roman + Hungary_MBA + Iberian_Chalcolitic @ 5.985703
    9 Baltic_LBA + British_Celtic + British_Roman + Spain_EN @ 5.994875
    10 Anatolia_Neolithic + Armenia_LBA + Baltic_LBA + Swedish_LN @ 5.996984
    11 British_Roman + Irish_BA + Nordic_MN_B + Remedello_BA @ 6.008116
    12 Bell_Beaker_Czech + British_Roman + Nordic_MN_B + Remedello_BA @ 6.022287
    13 Baltic_LBA + British_Celtic + British_Roman + Europe_EN @ 6.030338
    14 British_Roman + Corded_Ware_Proto_Unetice_Poland + Corded_Ware_Proto_Unetice_Poland + Europe_EN @ 6.030625
    15 Baltic_LBA + British_Roman + Hungary_MBA + Irish_LN @ 6.037634
    16 Baltic_LBA + British_Roman + Nordic_MN_B + Spain_EN @ 6.049317
    17 Baltic_LBA + British_Roman + Maros_BA + Remedello_BA @ 6.049735
    18 British_AngloSaxon + British_Roman + Irish_BA + Remedello_BA @ 6.070600
    19 Baltic_LBA + British_Roman + Germany_BA + Remedello_BA @ 6.071047
    20 Baltic_LBA + British_Roman + Germany_Bronze_Age + Remedello_BA @ 6.071047

    Done.

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    Quote Originally Posted by mlukas View Post
    Oh this. Ok. I think new Italian ancients are most needed indeed:)
    It will be great to have those Antonio M. Et al sample gedmatch kit numbers for this tool. Thanks again.

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    GedMatch - MDLP - K11 4 Ancestors Oracle


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    MDLP K11 at GedMatch, is the only calculator where I get Amerindian.

    A whopping 0.30% (take that Elizabeth Warren)

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    MDLP K11 Modern 4-Ancestors Oracle


    Using 2 populations approximation:

    1 50% Baltic_LBA +50% GermanStuttgart_LBK @ 5.960299


    Using 3 populations approximation:
    1 50% Corded_Ware_Germany +25% Europe_EN +25% Levant_N @ 3.257658


    Using 4 populations approximation:
    ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++
    1 Armenia_Chalcolithic + Baltic_LBA + GermanStuttgart_LBK + Swedish_LN @ 2.348543

    -------------------------------------------------------------------------------------------------------
    Last edited by Carlos; 18-12-19 at 18:21.

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    Quote Originally Posted by Carlos View Post
    MDLP K11 Modern 4-Ancestors Oracle


    Using 2 populations approximation:

    1 50% Baltic_LBA +50% GermanStuttgart_LBK @ 5.960299


    Using 3 populations approximation:
    1 50% Corded_Ware_Germany +25% Europe_EN +25% Levant_N @ 3.257658


    Using 4 populations approximation:
    ++++++++++++++++++++++++++++++++++++++++++++++++++ ++++++++++++++++++++++++++++++++++++++++++++++++++ +++
    1 Armenia_Chalcolithic + Baltic_LBA + GermanStuttgart_LBK + Swedish_LN @ 2.348543

    -------------------------------------------------------------------------------------------------------

    @Carlos
    Hi cousin :)
    Good morning.

    Total Half-Match segments (HIR) = 303.4 cM (8.461 Pct)
    Largest segment = 4.5 cM
    185 shared segments found for this comparison.
    631075 SNPs used for this comparison.
    54.685 Pct SNPs are full identical (WOW)

    Last edited by Duarte; 19-12-19 at 02:28.

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    How's Duarte?

    Good results.


    Our destinies have been reunited virtually for some reason that reason does not understand.

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    Vahaduo MDLP K11. ADD DIST COL - ADC - 0.25x




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    I have composed the MDLP K11 coordinates of the Mycenaean and Minoan samples, courtesy of Brick's post of their Gedmatch kit numbers.

    My closest sample is the Crete_Armenoi sample.

    Also a marked change in the top results, compared from the vanilla version of MDLP K11, with the inclusion of these samples.

    Below are the coordinates that I pasted into the "Source" tab:

    Mycenaean_I9006,0.77,0.31,0.00,16.04,6.93,50.42,0. 19,20.21,0.00,0.00,5.13
    Mycenaean_I9033,2.49,0.00,0.00,11.92,6.57,51.82,0. 00,16.70,0.79,0.32,9.39
    Mycenaean_I9010,0.78,0.58,0.00,19.75,1.57,54.35,0. 00,15.11,0.00,0.81,7.05
    Mycenaean_I9041,0.47,0.41,0.00,17.35,4.38,49.58,0. 35,19.52,0.00,0.00,7.94
    Crete_Armenoi_I9123,0.88,5.69,0.00,8.94,3.40,45.28 ,0.35,21.51,0.00,0.00,13.96
    Minoan_Lasithi_I9005,0.56,0.00,0.00,20.48,1.78,58. 89,0.00,18.29,0.00,0.00,0.00
    Minoan_Lasithi_I0070,0.16,0.00,0.00,20.75,1.55,59. 94,0.00,17.60,0.00,0.00,0.00
    Minoan_Lasithi_I0071,0.14,0.00,0.00,18.94,4.94,58. 27,0.00,17.72,0.00,0.00,0.00
    Minoan_Lasithi_I0073,0.25,0.28,0.11,18.83,2.42,60. 45,0.00,17.67,0.00,0.00,0.00
    Minoan_Lasithi_I0074,0.00,0.24,0.00,18.89,2.84,60. 58,0.00,16.88,0.00,0.57,0.00
    Minoan_Odigitria_I9127,0.00,0.00,0.00,17.10,5.62,5 8.85,0.00,18.43,0.00,0.00,0.00
    Minoan_Odigitria_I9129,0.00,0.00,1.11,19.68,4.70,5 7.86,1.31,15.34,0.00,0.00,0.00
    Minoan_Odigitria_I9128,0.56,0.00,0.00,17.13,18.59, 58.18,0.00,4.23,0.00,0.00,1.31
    Minoan_Odigitria_I9130,0.00,0.00,0.33,20.20,2.41,6 2.59,0.00,12.90,0.00,0.00,1.58
    Minoan_Odigitria_I9131,0.00,0.00,0.00,18.74,4.70,6 0.28,0.44,15.84,0.00,0.00,0.00

  22. #22
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    1 members found this post helpful.
    K11








    My God, I was in the macro murder of Transylvania, I had nothing to do with it.

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    https://en.wikipedia.org/wiki/Goyet_Caves

    My results

    Goyet56_16- Gravettian
    GoyetQ376_19


    In 2016, researchers successfully extracted DNA from several ancient human fossils at Goyet (with direct dates): GoyetQ116-1 (35,160-34,430 BP) and GoyetQ376-3 (33,940-33,140 BP) from the Aurignacian; GoyetQ376-19 (27,720-27,310 BP), GoyetQ53-1 (28,230-27,720 BP), GoyetQ55-2 (27,730-27,310 BP), GoyetQ56-16 (26,600-26,040 BP) and Goyet2878-21 (27,060-26,270 BP) from the Gravettian; and GoyetQ-2 (15,230-14,780 BP) from the Magdalenian. GoyetQ376-19, Goyet53-1 and Goyet56-16 were found to cluster genetically with several other Gravettian individuals from Europe in the Věstonice Cluster, while GoyetQ-2 was found to cluster genetically with several other Magdalenian individuals from Europe in the El Mirón Cluster

    With domesticated dog and everything. You will not go to bed without learning something new.

    I will investigate the rest, since it is the first time I hear those names, Ave Maria.

    https://journals.plos.org/plosgeneti...l.pgen.1006852
    The population genomics of archaeological transition in west Iberia: Investigation of ancient substructure using imputation and haplotype-based methods

    Last edited by Carlos; 19-12-19 at 01:38.

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    1 members found this post helpful.
    Quote Originally Posted by Jovialis View Post

    I have composed the MDLP K11 coordinates of the Mycenaean and Minoan samples, courtesy of Brick's post of their Gedmatch kit numbers.

    My closest sample is the Crete_Armenoi sample.

    Also a marked change in the top results, compared from the vanilla version of MDLP K11, with the inclusion of these samples.

    Below are the coordinates that I pasted into the "Source" tab:

    Mycenaean_I9006,0.77,0.31,0.00,16.04,6.93,50.42,0. 19,20.21,0.00,0.00,5.13
    Mycenaean_I9033,2.49,0.00,0.00,11.92,6.57,51.82,0. 00,16.70,0.79,0.32,9.39
    Mycenaean_I9010,0.78,0.58,0.00,19.75,1.57,54.35,0. 00,15.11,0.00,0.81,7.05
    Mycenaean_I9041,0.47,0.41,0.00,17.35,4.38,49.58,0. 35,19.52,0.00,0.00,7.94
    Crete_Armenoi_I9123,0.88,5.69,0.00,8.94,3.40,45.28 ,0.35,21.51,0.00,0.00,13.96
    Minoan_Lasithi_I9005,0.56,0.00,0.00,20.48,1.78,58. 89,0.00,18.29,0.00,0.00,0.00
    Minoan_Lasithi_I0070,0.16,0.00,0.00,20.75,1.55,59. 94,0.00,17.60,0.00,0.00,0.00
    Minoan_Lasithi_I0071,0.14,0.00,0.00,18.94,4.94,58. 27,0.00,17.72,0.00,0.00,0.00
    Minoan_Lasithi_I0073,0.25,0.28,0.11,18.83,2.42,60. 45,0.00,17.67,0.00,0.00,0.00
    Minoan_Lasithi_I0074,0.00,0.24,0.00,18.89,2.84,60. 58,0.00,16.88,0.00,0.57,0.00
    Minoan_Odigitria_I9127,0.00,0.00,0.00,17.10,5.62,5 8.85,0.00,18.43,0.00,0.00,0.00
    Minoan_Odigitria_I9129,0.00,0.00,1.11,19.68,4.70,5 7.86,1.31,15.34,0.00,0.00,0.00
    Minoan_Odigitria_I9128,0.56,0.00,0.00,17.13,18.59, 58.18,0.00,4.23,0.00,0.00,1.31
    Minoan_Odigitria_I9130,0.00,0.00,0.33,20.20,2.41,6 2.59,0.00,12.90,0.00,0.00,1.58
    Minoan_Odigitria_I9131,0.00,0.00,0.00,18.74,4.70,6 0.28,0.44,15.84,0.00,0.00,0.00
    Cool. I added to standard spredsheet on Vahaduo!

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