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Thread: Antonio M. et al 2019 - Iron Age Samples Raw Data

  1. #1
    Advisor Jovialis's Avatar
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    2 members found this post helpful.

    Antonio M. et al 2019 - Iron Age Samples Raw Data

    Here are the Iron Age samples from Ancient Rome: A genetic crossroads of Europe and the Mediterranean

    I used WGS extract to "convert" the files from BAM to usable raw data, in WGS combined, as well as AncestryDNA format.

    http://www.mediafire.com/file/hzqdryr37t7s0cm/Antonio_M._et_al_2019_-_Iron_Age_Samples.zip/file


    These files do not work on Gedmatch, they get status Percent HTZ out of range

    But they do work on Admixture Studio.

    Enjoy!
    Last edited by Jovialis; 23-12-19 at 19:24.

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    Regular Member Lukas's Avatar
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    1 members found this post helpful.
    Thank you for hard work.
    G25 Maps
    K36 Ancestral Report and Chromosomal Analysis

    https://www.lm-genetics.com


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    Advisor Jovialis's Avatar
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    My pleasure! :)

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    1 members found this post helpful.
    Quote Originally Posted by Jovialis View Post
    Here are the Iron Age samples from Ancient Rome: A genetic crossroads of Europe and the Mediterranean

    I used WGS extract to "convert" the files from BAM to usable raw data, in WGS combined, as well as AncestryDNA format.

    http://www.mediafire.com/file/hzqdryr37t7s0cm/Antonio_M._et_al_2019_-_Iron_Age_Samples.zip/file


    These files do not work on Gedmatch, they get status Percent HTZ out of range

    But they do work on Admixture Studio.

    Enjoy!
    the R1 files do work on GedMatch :)
    I haven’t tested the others.

  5. #5
    Advisor Jovialis's Avatar
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    Nice! good to know, R850, and R437 were getting the HTZ out of range error.

  6. #6
    Regular Member Lukas's Avatar
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    I read, this HTZ function was to prevent uploading artificial genomes to Gedmatch. But they killed Ancient samples too...

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    Regular Member torzio's Avatar
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    Quote Originally Posted by Jovialis View Post
    Nice! good to know, R850, and R437 were getting the HTZ out of range error.
    R1 works......just tried it ...see below

    Jtest Oracle results:

    Jtest Oracle population reference data revised 06 Nov 2012.

    Kit AG4512653

    Admix Results (sorted):

    # Population Percent
    1 WEST_MED 19.01
    2 ATLANTIC 18.22
    3 EAST_MED 16.57
    4 NORTH-CENTRAL_EURO 14.74
    5 SOUTH_BALTIC 7.61
    6 ASHKENAZI 6.96
    7 WEST_ASIAN 6.83
    8 EAST_EURO 6.82
    9 MIDDLE_EASTERN 2.49
    10 SIBERIAN 0.65
    11 WEST_AFRICAN 0.1

    Single Population Sharing:

    # Population (source) Distance
    1 North_Italian 4.85
    2 Tuscan 7.02
    3 PT 10.47
    4 ES 11.93
    5 RO 12.34
    6 FR 13.05
    7 Serbian 13.4
    8 AT 15.51
    9 South_Italian_&_Sicilian 15.79
    10 HU 17.48
    11 GR 17.72
    12 West_&_Central_German 19.23
    13 NL 20.17
    14 Cornish 20.55
    15 English 21.29
    16 Orcadian 22.93
    17 IE 23.07
    18 DK 23.65
    19 Scottish 24.13
    20 NO 25.24

    Mixed Mode Population Sharing:

    # Primary Population (source) Secondary Population (source) Distance
    1 58% FR + 42% GR @ 3.35
    2 85.3% Tuscan + 14.7% Erzya @ 3.41
    3 84.2% Tuscan + 15.8% East_Russian @ 3.44
    4 85.4% Tuscan + 14.6% North_Russian @ 3.47
    5 86.2% Tuscan + 13.8% Udmurt @ 3.65
    6 83.7% Tuscan + 16.3% West_Russian @ 3.74
    7 71.8% Tuscan + 28.2% AT @ 3.78
    8 84.1% Tuscan + 15.9% South_Finnish @ 3.83
    9 85.2% Tuscan + 14.8% East_Finnish @ 3.85
    10 74.4% Tuscan + 25.6% HU @ 3.85
    11 92.8% North_Italian + 7.2% Udmurt @ 3.88
    12 93% North_Italian + 7% Komi @ 3.91
    13 93.2% North_Italian + 6.8% Lezgin @ 3.96
    14 82.1% North_Italian + 17.9% Serbian @ 3.97
    15 84% Tuscan + 16% Ukrainian-Russian @ 3.97
    16 81.7% North_Italian + 18.3% RO @ 4.09
    17 93.2% North_Italian + 6.8% IR @ 4.09
    18 86.2% Tuscan + 13.8% Northwest_Russian @ 4.11
    19 83.5% Tuscan + 16.5% PL @ 4.11
    20 55.2% FR + 44.8% South_Italian_&_Sicilian @ 4.11
    Fathers mtdna ... T2b17
    Grandfather mtdna ... T1a1e
    Sons mtdna ... K1a4
    Mum paternal line ... R1b-S8172
    Grandmum paternal side ... I1-Y33791
    Wife paternal line ... R1a-Z282

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