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Thread: Non-West Eurasian DNA Studies from the Reich Lab Data Set

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    Advisor Jovialis's Avatar
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    Post Non-West Eurasian DNA Studies from the Reich Lab Data Set

    Here is a list on non-west Eurasian DNA studies that I have composed from the Reich Lab data set (March 2020 update).

    I have pruned them out of the project I am undertaking for ascertaining West Eurasian aDNA raw data. Nevertheless, it makes for a good reference for obtaining them in the future.



    1. Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia
    2. Genome sequence of a 45,000-year-old modern human from western Siberia
    3. Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India*
    4. Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc
    5. Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe
    6. A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan
    7. Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity
    8. The genetic prehistory of the Andean highlands 7000 years BP though European contact
    9. Population Turnover in Remote Oceania Shortly after Initial Settlement
    10. Ancient West African foragers in the context of African population history
    11. Ancient genomes document multiple waves of migration in Southeast Asian prehistory
    12. Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent
    13. Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil
    14. The prehistoric peopling of Southeast Asia
    15. Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation
    16. Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans
    17. Early human dispersals within the Americas
    18. The formation of human populations in South and Central Asia
    19. The genetic prehistory of southern Africa
    20. Reconstructing the Deep Population History of Central and South America
    21. Language continuity despite population replacement in Remote Oceania
    22. Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa
    23. Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans
    24. The genetic prehistory of the New World Arctic
    25. POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans
    26. Ancient human genome sequence of an extinct Palaeo-Eskimo.
    27. The genome of a Late Pleistocene human from a Clovis burial site in western Montana
    28. The ancestry and affiliations of Kennewick Man
    29. Ancient human parallel lineages within North America contributed to a coastal expansion
    30. Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago
    31. Origins and genetic legacies of the Caribbean Taino
    32. An Ancient Harappan Genome Lacks Ancestry from Steppe Pastoralists or Iranian Farmers
    33. The population history of northeastern Siberia since the Pleistocene
    34. Reconstructing Prehistoric African Population Structure
    35. Genetic evidence for two founding populations of the Americas
    36. Genomic insights into the peopling of the Southwest Pacific
    37. 40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia

  2. #2
    Advisor Jovialis's Avatar
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    Ethnic group
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    Here are the sources to obtain the samples

    Ancient West African foragers in the context of African population history https://www.ebi.ac.uk/ena/browser/view/PRJEB32086 Africa
    Ancient Ethiopian genome reveals extensive Eurasian admixture throughout the African continent https://www.africangenome.org Africa
    The genetic prehistory of southern Africa https://www.ebi.ac.uk/ena/browser/view/PRJEB36063 Africa
    Ancient DNA reveals a multistep spread of the first herders into sub-Saharan Africa https://www.ebi.ac.uk/ena/browser/view/PRJEB31373 Africa
    Southern African ancient genomes estimate modern human divergence to 350,000 to 260,000 years ago https://www.ebi.ac.uk/ena/browser/view/PRJEB22660 Africa
    Reconstructing Prehistoric African Population Structure https://www.ebi.ac.uk/ena/browser/view/PRJEB21878 Africa
    Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity https://www.ncbi.nlm.nih.gov/bioproj...rm=PRJNA356890 Americas
    The genetic prehistory of the Andean highlands 7000 years BP though European contact https://www.ncbi.nlm.nih.gov/bioproj...rm=PRJNA470966 Americas
    Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans https://www.ebi.ac.uk/ena/browser/view/PRJEB20398 Americas
    Early human dispersals within the Americas https://www.ebi.ac.uk/ena/browser/view/PRJEB29074 Americas
    Reconstructing the Deep Population History of Central and South America https://www.ebi.ac.uk/ena/browser/view/PRJEB28961 Americas
    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans https://www.ncbi.nlm.nih.gov/sra?term=SRP029640 Americas
    The genetic prehistory of the New World Arctic https://www.ebi.ac.uk/ena/browser/view/PRJEB6516 Americas
    POPULATION GENETICS. Genomic evidence for the Pleistocene and recent population history of Native Americans https://www.ebi.ac.uk/ena/browser/view/PRJEB9733 Americas
    Ancient human genome sequence of an extinct Palaeo-Eskimo. https://www.ncbi.nlm.nih.gov//bioproject/PRJNA46213 Americas
    The genome of a Late Pleistocene human from a Clovis burial site in western Montana https://www.ebi.ac.uk/ena/browser/view/PRJNA229448 Americas
    The ancestry and affiliations of Kennewick Man https://www.ncbi.nlm.nih.gov/sra?term=SRS937952 Americas
    Ancient human parallel lineages within North America contributed to a coastal expansion https://www.ebi.ac.uk/ena/browser/view/PRJEB25445 Americas
    Origins and genetic legacies of the Caribbean Taino https://www.ebi.ac.uk/ena/browser/view/PRJEB22578 Americas
    Genetic evidence for two founding populations of the Americas https://www.ebi.ac.uk/ena/browser/view/PRJNA140899 Americas
    Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia https://www.ebi.ac.uk/ena/browser/view/PRJEB24629 Americas
    The population history of northeastern Siberia since the Pleistocene https://www.ebi.ac.uk/ena/browser/view/PRJEB29700 Central Asia
    Genome sequence of a 45,000-year-old modern human from western Siberia https://www.ebi.ac.uk/ena/browser/view/PRJEB6622 Central Asia
    A partial nuclear genome of the Jomons who lived 3000 years ago in Fukushima, Japan https://www.ncbi.nlm.nih.gov/sra?term=DRA004001 East Asia
    40,000-Year-Old Individual from Asia Provides Insight into Early Population Structure in Eurasia https://www.ebi.ac.uk/ena/browser/view/PRJEB20217 East Asia
    Long-term genetic stability and a high-altitude East Asian origin for the peoples of the high valleys of the Himalayan arc project accession no. SRP065070 and sample accession nos.
    SRR2751055– SRR2751058, SRR2751060– SRR2751063, SRR2751066– SRR2751067,
    SRR2751070, SRR2751142, SRR2751148, SRR2751152, SRR3222643, SRR3222649,
    SRR3222655, SRR3222659, SRR3222661, SRR3222664, SRR3222686, SRR3222749,
    SRR3222758, SRR3222765, and SRR3222772).
    East Asia
    A revised timescale for human evolution based on ancient mitochondrial genomes ? n/a
    Bronze Age population dynamics and the rise of dairy pastoralism on the eastern Eurasian steppe https://www.ebi.ac.uk/ena/browser/view/PRJEB31215 n/a
    Population Turnover in Remote Oceania Shortly after Initial Settlement https://www.ebi.ac.uk/ena/browser/view/PRJEB24938 Oceania
    Language continuity despite population replacement in Remote Oceania https://www.ebi.ac.uk/ena/browser/view/PRJEB24810 Oceania
    Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil https://www.ebi.ac.uk/ena/browser/view/PRJEB7622 Polynesia
    Genomic insights into the peopling of the Southwest Pacific https://www.ebi.ac.uk/ena/browser/view/PRJEB14728 Polynesia
    The formation of human populations in South and Central Asia https://www.ebi.ac.uk/ena/browser/view/PRJEB32466 South and Central Asia
    An Ancient Harappan Genome Lacks Ancestry from Steppe Pastoralists or Iranian Farmers https://www.ebi.ac.uk/ena/browser/view/PRJEB34154 South and Central Asia
    Ancient DNA from the skeletons of Roopkund Lake reveals Mediterranean migrants in India https://www.ebi.ac.uk/ena/browser/view/PRJEB29537 South and Central Asia
    Ancient genomes document multiple waves of migration in Southeast Asian prehistory https://www.ebi.ac.uk/ena/browser/view/PRJEB24939 Southeast Asia
    The prehistoric peopling of Southeast Asia https://www.ebi.ac.uk/ena/browser/view/PRJEB26721 Southeast Asia
    Genomic analysis of Andamanese provides insights into ancient human migration into Asia and adaptation https://www.ebi.ac.uk/ena/browser/view/PRJEB16019 Southeast Asia

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