G25 G25 Central, Eastern and South Eastern Europe Iron Age Calculator

^^Are these samples even available on G25? I think we have may more aDNA processed than Davidski.
As far as I know, some samples may have been disregarded due to quality issues.
Not sure why some of them are not there though. The Sintashta samples from Allentoft et al. are examples (?).
Plus, some results may differ. For instance, the coordinates for I0231 informed here are different from the (preliminary) coordinates informed for the same sample here (from Celtic Paper). Don't know iif the coordinates may change in each run or if they dynamically change as more samples integrate the model or whatever.

Anyway, you could try it with the ancient scaled and modern scaled coordinates available for the G25 PCA and see what Vahaduo shows.
 
Last edited:
As far as I know, some samples may have been disregarded due to quality issues.
Not sure why some of them are not there though. The Sintashta samples from Allentoft et al. are examples (?).
Plus, some results may differ. For instance, the coordinates for I0231 informed here are different from the (preliminary) coordinates informed for the same sample here (from Celtic Paper). Don't know iif the coordinates may change in each run or if they dynamically change as more samples integrate the model or whatever.
Anyway, you could try it with the ancient scaled and modern scaled coordinates available for the G25 PCA and see what Vahaduo shows.

I tried my best to recreate the model, but this is the best I could do with the samples available. Some of them are indeed not there, like Sintashta. These samples are scaled:

Code:
Bolshoy_Ostrov:RUS_Bolshoy_Oleni_Ostrov_o:BOO006,0.080814,-0.207168,0.120301,0.085272,-0.076322,-0.010598,0.003055,0.001846,0.002659,-0.03991,0.042708,-0.008692,0.019772,-0.04748,-0.015065,0.001193,0.000913,0.003547,-0.00176,-5e-04,0.000374,0.009274,0.000739,-0.009399,0.003233
Yamnaya:Yamnaya_RUS_Kalmykia:RISE546,0.106994,0.090382,0.058454,0.121126,-0.03139,0.04769,0.00188,-0.002769,-0.065243,-0.087291,-0.00341,0.000899,-0.000892,-0.023671,0.007057,0.011138,0.006258,0.005194,0,0.001501,-0.004118,-0.006801,0.029456,0.032053,-0.016645
Yamnaya:Yamnaya_RUS_Kalmykia:RISE547,0.119514,0.097491,0.045632,0.117896,-0.028005,0.038766,0.00517,-0.003692,-0.043359,-0.067974,-0.00406,0.001649,0.000743,-0.025598,0.035287,0.00411,-0.016168,0.002027,0.010056,0.006878,-0.003993,0.002226,0.007025,0.018316,-0.007424
Yamnaya:Yamnaya_RUS_Kalmykia:RISE550,0.124067,0.097491,0.046763,0.107237,-0.02185,0.042391,0.00094,-0.010615,-0.050313,-0.073441,0.006008,-0.004646,-0.005054,-0.01734,0.034473,0.01896,0.002477,-0.005701,0.002514,0.009254,-0.000125,0.00643,0.020952,0.01699,0.002275
Yamnaya:Yamnaya_RUS_Kalmykia:RISE552,0.106994,0.089367,0.035826,0.106914,-0.034468,0.052431,0.00564,-0.000462,-0.060335,-0.081824,-0.002761,0.001199,-0.001041,-0.025323,0.028501,0.019093,0.001565,-0.006334,-0.002891,0.013256,-0.000998,0.002226,0.010723,0.023256,-0.00479
Yamnaya:Yamnaya_RUS_Samara:I0231,0.121791,0.083273,0.04714,0.114666,-0.032314,0.048527,0.002585,-0.003,-0.052358,-0.073623,0.00065,0.004796,0.000297,-0.023258,0.030401,0.019491,0.007041,-0.00114,-0.002388,0.015007,-0.004243,-0.002102,0.003697,0.011086,0.00012
Yamnaya:Yamnaya_RUS_Samara:I0357,0.126344,0.092413,0.038089,0.107883,-0.029852,0.039324,0.00564,-0.008077,-0.043768,-0.065605,-0.001137,-0.00015,-0.003568,-0.024772,0.035287,0.01896,0.00013,0.003167,-0.005279,0.004877,0.003619,0.006925,0.008504,0.012532,-0.005269
Yamnaya:Yamnaya_RUS_Samara:I0370,0.124067,0.08632,0.049403,0.111759,-0.027697,0.044623,0.00517,-0.000462,-0.066061,-0.066516,-0.002436,-0.00015,0.000297,-0.025735,0.03868,0.013789,0.000782,-0.000127,-0.005154,0.015758,0.001622,-0.0115,0.007025,0.021328,-0.003952
Yamnaya:Yamnaya_RUS_Samara:I0429,0.130897,0.088351,0.044123,0.126617,-0.030467,0.050758,0.005875,0.003,-0.059516,-0.075992,0.000974,-0.008992,0.002081,-0.018717,0.039359,0.020949,0.004955,-0.000887,0.003897,0.022636,-0.005615,0.000495,0.020089,0.018798,-0.013651
Yamnaya:Yamnaya_RUS_Samara:I0438,0.124067,0.085304,0.043369,0.119511,-0.032621,0.049643,0.0047,-0.000462,-0.065448,-0.078179,-0.003085,0.003897,-0.009366,-0.030965,0.029587,0.005569,0.005867,-0.005068,-0.006285,0.016383,-0.003868,0.000866,0.014543,0.022413,-0.006227
Yamnaya:Yamnaya_RUS_Samara:I0443,0.124067,0.093429,0.039975,0.108206,-0.027082,0.045459,0.003995,-0.007154,-0.052563,-0.081642,0.001299,-3e-04,0.000595,-0.016515,0.044923,0.003978,-0.014212,-0.001394,-0.003771,0.013006,0.00262,0.000247,0.003944,0.018918,0.002036
Yamnaya:Yamnaya_RUS_Samara:I0444,0.125205,0.08632,0.045632,0.119188,-0.024928,0.047969,0.00564,-0.001154,-0.050108,-0.073259,0.002598,0.002847,0,-0.042663,0.029451,0.022938,-0.000522,0.003294,-0.010307,0.013131,-0.015098,0.004204,0.010846,0.016267,0.003952
Catacomb:UKR_Catacomb:MJ09,0.118376,0.088351,0.05506,0.09367,-0.014772,0.041834,0.003995,0.004615,-0.050517,-0.063965,0.008444,0.005245,0.000446,-0.033305,0.040716,0.017104,-0.012256,-0.005448,-0.004022,0.012131,-0.000624,0.010634,0.005916,0.01446,0.005748
Catacomb:RUS_Catacomb:MK3003,0.114961,0.081242,0.039975,0.10336,-0.030159,0.0502,0.007755,-0.011538,-0.059721,-0.075628,0.008931,0.006444,-0.001487,-0.026286,0.03298,0.017502,0.008866,-0.005701,-0.00817,0.014257,-0.002496,0.001731,0.018117,0.030486,0.00479
Catacomb:RUS_Catacomb:RK4001,0.120652,0.093429,0.036958,0.0969,-0.028005,0.037092,-0.00047,-0.008769,-0.051949,-0.06925,-0.004872,0.002847,0.007433,-0.013625,0.042345,-0.010872,-0.022948,-0.005321,-0.004651,0.002251,0,-0.003215,0.013311,0.018798,-0.012933
Nordic_BA:DNK_BA:RISE47,0.105855,0.139128,0.071653,0.053295,0.024004,0.029284,-0.00188,0.002308,0.000409,-0.010205,0.000812,0.002698,-0.007433,-0.023946,0.014251,0.013259,0.00691,0.013302,0.01169,0.008004,0.030696,-0.018672,-0.002958,-0.002289,0.000239
Nordic_BA:SWE_BA:RISE175,0.119514,0.142174,0.073916,0.062016,0.031083,0.011156,0.012691,0.015692,0.011658,-0.003645,-0.001624,-0.006744,-0.007879,-0.009634,0.014794,0.024794,0.018775,-0.006334,-0.01081,-0.00075,-0.001497,0.002844,0.006532,-0.011568,0.000359
Halstatt/Early_Le_Tene:FRA_Alsace_IA1:NOR2B6,0.127482,0.150298,0.047894,0.009044,0.044624,0.002789,-0.015511,0.010153,0.018816,0.018588,0.012991,0.019183,-0.001784,-0.00812,0.013979,0.01538,0.026859,0.004054,0.004525,0.003627,-0.000499,-0.006925,-0.004807,-0.000241,-0.012214
Remedello:ITA_Remedello_BA:RISE487,0.124067,0.162485,0.041106,-0.045866,0.075706,-0.025658,-0.0094,0.011769,0.05154,0.096403,-0.010068,0.01079,-0.031367,-0.016652,-0.017779,-0.000663,0.013038,0.00266,0.017095,-0.018384,0.009733,0.008779,-0.019596,-0.018436,-0.004431
Remedello:ITA_Remedello_BA:RISE489,0.121791,0.173656,0.041106,-0.062662,0.07663,-0.028726,-0.00564,0.004384,0.059925,0.079637,-0.006171,0.017534,-0.030773,-0.013212,-0.021172,-0.008353,0.00691,0.004561,0.015712,-0.006003,-0.003743,-0.003462,-0.012941,-0.026992,-0.007903
C_Italian_ChL:ITA_Grotta_Continenza_CA:RMPR4,0.126344,0.179749,0.02753,-0.070091,0.065551,-0.023985,-0.00047,-0.004384,0.051745,0.092576,-0.001949,0.01124,-0.029732,-0.003165,-0.023208,-0.005436,0.010431,0.002914,0.010307,-0.007629,-0.004866,0.004328,-0.011585,-0.018677,-0.000838
C_Italian_ChL:ITA_Grotta_Continenza_CA:RMPR5,0.126344,0.19092,0.036958,-0.070414,0.072937,-0.032072,0.00047,-0.001154,0.053994,0.100048,-0.003085,0.010341,-0.027354,-0.003441,-0.022258,-0.013126,0.000782,0.00228,0.011439,-0.01138,0.004742,-0.001855,-0.011462,-0.018918,-0.003952
C_Italian_ChL:ITA_Monte_San_Biagio_CA:RMPR1014,0.121791,0.179749,0.031678,-0.061047,0.072321,-0.028726,-0.00893,-0.002769,0.049495,0.092394,0.004384,0.013788,-0.0278,-0.005505,-0.019001,-0.001724,0.0103,0.002407,0.003394,-0.011756,0.009358,0.010634,-0.0053,-0.033258,0.001676
C_Italian_N:ITA_Grotta_Continenza_N:RMPR2,0.126344,0.183811,0.004525,-0.083334,0.056934,-0.047969,-0.01081,-0.013846,0.045404,0.088749,0.006171,0.016635,-0.020664,-0.01156,-0.035152,0.003845,0.035725,0.002914,-0.000251,-0.007629,-0.017968,0.005317,-0.008011,-0.010604,-0.012693
C_Italian_N:ITA_Grotta_Continenza_N:RMPR3,0.118376,0.186857,0.007542,-0.094316,0.055703,-0.042391,-0.011986,-0.004615,0.043359,0.089113,0.010068,0.012739,-0.0278,-0.007432,-0.033523,-0.014187,0.016168,0.005574,0.014832,-0.016008,-0.013975,0.005193,-0.002711,0.005784,-0.008502
C_Italian_N:ITA_Grotta_Continenza_N:RMPR8,0.120652,0.182795,0.011691,-0.082042,0.053856,-0.042112,-0.00376,-0.007615,0.042336,0.08638,-0.003735,0.011989,-0.02334,-0.002615,-0.034202,-0.016971,0.005476,-0.002154,0.008925,-0.014007,-0.005989,0.006801,-0.003821,-0.006145,0.00479
C_Italian_N:ITA_Grotta_Continenza_N:RMPR9,0.120652,0.186857,0.003017,-0.097546,0.052933,-0.046296,-0.001175,-0.011307,0.044995,0.08146,0.007795,0.01139,-0.022299,0.006193,-0.042752,-0.014054,0.01695,-0.00266,0.009176,-0.011005,-0.014474,0.004575,0.002588,0.000964,-0.000359
C_Italian_N:ITA_Grotta_Continenza_N:RMPR10,0.125205,0.180764,0.014708,-0.093993,0.057241,-0.046017,-0.00141,-0.003231,0.041927,0.0831,0.01153,0.015586,-0.02557,-0.008395,-0.034744,-0.015115,0.022948,0.004054,0.010559,-0.016508,-0.011729,-0.001113,-0.00037,-0.008435,0.005987
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR16,0.120652,0.174671,0.019233,-0.068799,0.06432,-0.041555,-0.001645,0.003692,0.039882,0.086744,0.001624,0.019782,-0.029583,-0.007707,-0.022665,0.00053,0.019036,0.011529,0.013701,-0.004752,0.001248,0.011871,-0.015283,-0.017954,0.006107
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR18,0.126344,0.176702,0.004148,-0.085272,0.046162,-0.037371,-0.002115,0.001154,0.047654,0.085833,0.001949,0.018284,-0.034935,0.003028,-0.032573,-0.01127,0.005215,-0.00076,0.006159,-0.014632,-0.006738,0.002349,-0.003204,-0.023136,-0.003952
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR19,0.130897,0.175687,0.012068,-0.07106,0.065551,-0.037092,-0.005405,-0.002308,0.039269,0.086744,-0.002436,0.007643,-0.025124,-0.014175,-0.024158,0.003315,0.023991,0.002534,0.004274,0.005002,-0.008485,-0.002226,-0.009983,-0.019521,0.000599
Minoan:GRC_Minoan_Kephala_Petras:Pta08,0.1161,0.170609,-0.018479,-0.091732,0.028005,-0.033188,0.003995,-0.002769,0.021066,0.060685,0.00747,0.007643,-0.01665,0.010046,-0.03583,-0.02254,0,0.005954,0.009176,-0.009755,-0.009483,0.006059,-0.006902,-0.004217,0.002395
Minoan:GRC_Minoan_Lassithi:I0070,0.121791,0.174671,-0.028284,-0.093993,0.035699,-0.043786,-0.00564,-0.001385,0.003886,0.059956,0.008119,0.016036,-0.018583,-0.001789,-0.027144,-0.00769,0.024773,-0.000507,0.005782,-0.004627,-0.010482,0.003462,-0.005669,0.003374,-0.007065
Minoan:GRC_Minoan_Lassithi:I0071,0.114961,0.167562,-0.016216,-0.088502,0.033237,-0.038487,-0.00188,-0.00923,0.002454,0.056129,0.002761,0.011839,-0.024678,-0.002064,-0.037187,-0.009281,0.02034,-0.00152,0.007793,-0.010255,-0.013601,0.009769,-0.007395,0.005663,-0.002634
Minoan:GRC_Minoan_Lassithi:I0073,0.118376,0.168578,-0.011691,-0.093993,0.022158,-0.034582,-0.00423,-0.002769,0.013703,0.065423,0.003735,0.013788,-0.023637,0.008808,-0.04343,-0.012331,0.016298,-0.007601,0.008925,-0.025637,-0.01123,0.010758,-0.006039,-0.005422,0.000359
Minoan:GRC_Minoan_Lassithi:I0074,0.117238,0.164516,-0.016593,-0.096254,0.025235,-0.044623,0.000705,-0.005077,0.01493,0.060685,0.005196,0.013338,-0.02334,-0.003165,-0.042209,-0.022142,0.004955,0.003674,0.00905,-0.018009,-0.018093,0.007048,-0.010599,-0.006507,0.002275
Minoan:GRC_Minoan_Lassithi:I9005,0.124067,0.177718,-0.018102,-0.097223,0.03139,-0.03765,0.004465,0.001154,0.016771,0.056858,-0.004872,0.021581,-0.035381,-0.002064,-0.037323,-0.003315,0.020601,-0.000253,0.012821,-0.00963,-0.013476,0.010881,0.004314,-0.00241,-0.005149
Minoan:GRC_Minoan_Odigitria_low_res:I9130,0.126344,0.191935,-0.012822,-0.081073,0.051702,-0.036814,-0.005405,0.006923,0.01309,0.056129,0.011854,0.025028,-0.007879,-0.001651,-0.029858,-0.004243,0.004433,0.014569,0.01257,-0.029764,0.007986,-0.00915,-0.010969,-0.006507,-0.01437
Minoan:GRC_Minoan_Odigitria_low_res:I9131,0.133173,0.17264,-0.006411,-0.106268,0.03693,-0.047411,-0.006345,-0.000692,0.001841,0.052484,-0.008769,3e-04,-0.024678,-0.014726,-0.023751,0.00411,0.021644,-0.00152,0.024008,0.005753,-0.011355,0.011252,-0.016022,0.019882,-0.013891
Anatolia_BA:TUR_Isparta_EBA:I2495,0.113823,0.1635,-0.035072,-0.081073,0.002462,-0.024263,0.00188,-0.007615,-0.009817,0.032802,0.003248,0.004796,-0.019475,0.003853,-0.024973,0.006099,0.022296,-0.002534,0.008422,0.006378,-0.007612,0.000618,0.002095,-0.009037,0.000958
Anatolia_BA:TUR_Isparta_EBA:I2499,0.117238,0.152329,-0.04186,-0.077843,-0.008925,-0.025658,-0.000235,-0.004846,-0.015544,0.030251,0.010718,0.002098,-0.004014,-0.011973,-0.021715,0.007823,0.028424,-0.003294,0.008045,-0.002751,-0.004367,-0.00643,0.005176,-0.002048,0.001557
Anatolia_BA:TUR_Isparta_EBA:I2683,0.112685,0.161469,-0.043746,-0.081719,-0.00677,-0.024263,-0.00141,0.000923,-0.009408,0.035901,0.006496,0.003597,-0.014569,-0.001651,-0.020901,-0.004243,0.01356,-0.00152,0.004651,-0.005753,-0.001373,-0.003833,-0.005546,0.001446,-0.009221
Iberomaurusian:MAR_Taforalt:TAF009,-0.162767,0.07718,-0.024513,-0.079135,0.009848,-0.047969,-0.052877,0.020538,0.13294,0.002005,0.025333,-0.026676,0.057978,-0.052985,0.072882,-0.034076,0.002347,-0.05625,-0.130475,0.04152,-0.026204,-0.120314,0.067909,-0.016508,0.012334
Iberomaurusian:MAR_Taforalt:TAF010,-0.193499,0.083273,-0.03017,-0.088502,0.034776,-0.055499,-0.076378,0.019384,0.163619,0.008565,0.02111,-0.030573,0.07879,-0.046104,0.077496,-0.046141,-0.00665,-0.069805,-0.144176,0.036518,-0.042924,-0.129217,0.07629,-0.015303,0.018322
Iberomaurusian:MAR_Taforalt:TAF011,-0.194638,0.085304,-0.021873,-0.088825,0.026774,-0.059961,-0.072148,0.019845,0.161165,0.002551,0.016564,-0.035818,0.080574,-0.051196,0.066367,-0.037523,0.012126,-0.071199,-0.14493,0.035767,-0.041427,-0.12662,0.068279,-0.011447,0.018441
Iberomaurusian:MAR_Taforalt:TAF013,-0.196914,0.082258,-0.026398,-0.088502,0.032314,-0.057173,-0.074733,0.017768,0.156665,0.002369,0.02111,-0.036717,0.077898,-0.052159,0.072746,-0.038584,0.000913,-0.069552,-0.141285,0.039894,-0.035687,-0.125384,0.075428,-0.011206,0.020477
Iberomaurusian:MAR_Taforalt:TAF014,-0.201467,0.079211,-0.018479,-0.083011,0.034468,-0.055499,-0.076848,0.014538,0.162596,0.002005,0.020461,-0.029374,0.078344,-0.054223,0.066503,-0.025192,0.017602,-0.063724,-0.151215,0.04127,-0.042176,-0.126126,0.077153,-0.014339,0.012693
 
That

Target: Riverman_scaled
Distance: 2.5962% / 0.02596216
40.6Yamnaya
29.2C_Italian_ChL
19.4Nordic_BA
4.6Minoan
3.6Remedello
2.6C_Italian_N




Custom PCA with the basic European orientation and your references plotted:

Italian-PCA.jpg


https://ibb.co/cYkvGCN


That's not perfect, because IBM is outside the usual European variation and would plot very differently on a global PCA, but it largely works out for the clearly European components.
 
I tried my best to recreate the model, but this is the best I could do with the samples available. Some of them are indeed not there, like Sintashta. These samples are scaled:

Code:
Bolshoy_Ostrov:RUS_Bolshoy_Oleni_Ostrov_o:BOO006,0.080814,-0.207168,0.120301,0.085272,-0.076322,-0.010598,0.003055,0.001846,0.002659,-0.03991,0.042708,-0.008692,0.019772,-0.04748,-0.015065,0.001193,0.000913,0.003547,-0.00176,-5e-04,0.000374,0.009274,0.000739,-0.009399,0.003233
Yamnaya:Yamnaya_RUS_Kalmykia:RISE546,0.106994,0.090382,0.058454,0.121126,-0.03139,0.04769,0.00188,-0.002769,-0.065243,-0.087291,-0.00341,0.000899,-0.000892,-0.023671,0.007057,0.011138,0.006258,0.005194,0,0.001501,-0.004118,-0.006801,0.029456,0.032053,-0.016645
Yamnaya:Yamnaya_RUS_Kalmykia:RISE547,0.119514,0.097491,0.045632,0.117896,-0.028005,0.038766,0.00517,-0.003692,-0.043359,-0.067974,-0.00406,0.001649,0.000743,-0.025598,0.035287,0.00411,-0.016168,0.002027,0.010056,0.006878,-0.003993,0.002226,0.007025,0.018316,-0.007424
Yamnaya:Yamnaya_RUS_Kalmykia:RISE550,0.124067,0.097491,0.046763,0.107237,-0.02185,0.042391,0.00094,-0.010615,-0.050313,-0.073441,0.006008,-0.004646,-0.005054,-0.01734,0.034473,0.01896,0.002477,-0.005701,0.002514,0.009254,-0.000125,0.00643,0.020952,0.01699,0.002275
Yamnaya:Yamnaya_RUS_Kalmykia:RISE552,0.106994,0.089367,0.035826,0.106914,-0.034468,0.052431,0.00564,-0.000462,-0.060335,-0.081824,-0.002761,0.001199,-0.001041,-0.025323,0.028501,0.019093,0.001565,-0.006334,-0.002891,0.013256,-0.000998,0.002226,0.010723,0.023256,-0.00479
Yamnaya:Yamnaya_RUS_Samara:I0231,0.121791,0.083273,0.04714,0.114666,-0.032314,0.048527,0.002585,-0.003,-0.052358,-0.073623,0.00065,0.004796,0.000297,-0.023258,0.030401,0.019491,0.007041,-0.00114,-0.002388,0.015007,-0.004243,-0.002102,0.003697,0.011086,0.00012
Yamnaya:Yamnaya_RUS_Samara:I0357,0.126344,0.092413,0.038089,0.107883,-0.029852,0.039324,0.00564,-0.008077,-0.043768,-0.065605,-0.001137,-0.00015,-0.003568,-0.024772,0.035287,0.01896,0.00013,0.003167,-0.005279,0.004877,0.003619,0.006925,0.008504,0.012532,-0.005269
Yamnaya:Yamnaya_RUS_Samara:I0370,0.124067,0.08632,0.049403,0.111759,-0.027697,0.044623,0.00517,-0.000462,-0.066061,-0.066516,-0.002436,-0.00015,0.000297,-0.025735,0.03868,0.013789,0.000782,-0.000127,-0.005154,0.015758,0.001622,-0.0115,0.007025,0.021328,-0.003952
Yamnaya:Yamnaya_RUS_Samara:I0429,0.130897,0.088351,0.044123,0.126617,-0.030467,0.050758,0.005875,0.003,-0.059516,-0.075992,0.000974,-0.008992,0.002081,-0.018717,0.039359,0.020949,0.004955,-0.000887,0.003897,0.022636,-0.005615,0.000495,0.020089,0.018798,-0.013651
Yamnaya:Yamnaya_RUS_Samara:I0438,0.124067,0.085304,0.043369,0.119511,-0.032621,0.049643,0.0047,-0.000462,-0.065448,-0.078179,-0.003085,0.003897,-0.009366,-0.030965,0.029587,0.005569,0.005867,-0.005068,-0.006285,0.016383,-0.003868,0.000866,0.014543,0.022413,-0.006227
Yamnaya:Yamnaya_RUS_Samara:I0443,0.124067,0.093429,0.039975,0.108206,-0.027082,0.045459,0.003995,-0.007154,-0.052563,-0.081642,0.001299,-3e-04,0.000595,-0.016515,0.044923,0.003978,-0.014212,-0.001394,-0.003771,0.013006,0.00262,0.000247,0.003944,0.018918,0.002036
Yamnaya:Yamnaya_RUS_Samara:I0444,0.125205,0.08632,0.045632,0.119188,-0.024928,0.047969,0.00564,-0.001154,-0.050108,-0.073259,0.002598,0.002847,0,-0.042663,0.029451,0.022938,-0.000522,0.003294,-0.010307,0.013131,-0.015098,0.004204,0.010846,0.016267,0.003952
Catacomb:UKR_Catacomb:MJ09,0.118376,0.088351,0.05506,0.09367,-0.014772,0.041834,0.003995,0.004615,-0.050517,-0.063965,0.008444,0.005245,0.000446,-0.033305,0.040716,0.017104,-0.012256,-0.005448,-0.004022,0.012131,-0.000624,0.010634,0.005916,0.01446,0.005748
Catacomb:RUS_Catacomb:MK3003,0.114961,0.081242,0.039975,0.10336,-0.030159,0.0502,0.007755,-0.011538,-0.059721,-0.075628,0.008931,0.006444,-0.001487,-0.026286,0.03298,0.017502,0.008866,-0.005701,-0.00817,0.014257,-0.002496,0.001731,0.018117,0.030486,0.00479
Catacomb:RUS_Catacomb:RK4001,0.120652,0.093429,0.036958,0.0969,-0.028005,0.037092,-0.00047,-0.008769,-0.051949,-0.06925,-0.004872,0.002847,0.007433,-0.013625,0.042345,-0.010872,-0.022948,-0.005321,-0.004651,0.002251,0,-0.003215,0.013311,0.018798,-0.012933
Nordic_BA:DNK_BA:RISE47,0.105855,0.139128,0.071653,0.053295,0.024004,0.029284,-0.00188,0.002308,0.000409,-0.010205,0.000812,0.002698,-0.007433,-0.023946,0.014251,0.013259,0.00691,0.013302,0.01169,0.008004,0.030696,-0.018672,-0.002958,-0.002289,0.000239
Nordic_BA:SWE_BA:RISE175,0.119514,0.142174,0.073916,0.062016,0.031083,0.011156,0.012691,0.015692,0.011658,-0.003645,-0.001624,-0.006744,-0.007879,-0.009634,0.014794,0.024794,0.018775,-0.006334,-0.01081,-0.00075,-0.001497,0.002844,0.006532,-0.011568,0.000359
Halstatt/Early_Le_Tene:FRA_Alsace_IA1:NOR2B6,0.127482,0.150298,0.047894,0.009044,0.044624,0.002789,-0.015511,0.010153,0.018816,0.018588,0.012991,0.019183,-0.001784,-0.00812,0.013979,0.01538,0.026859,0.004054,0.004525,0.003627,-0.000499,-0.006925,-0.004807,-0.000241,-0.012214
Remedello:ITA_Remedello_BA:RISE487,0.124067,0.162485,0.041106,-0.045866,0.075706,-0.025658,-0.0094,0.011769,0.05154,0.096403,-0.010068,0.01079,-0.031367,-0.016652,-0.017779,-0.000663,0.013038,0.00266,0.017095,-0.018384,0.009733,0.008779,-0.019596,-0.018436,-0.004431
Remedello:ITA_Remedello_BA:RISE489,0.121791,0.173656,0.041106,-0.062662,0.07663,-0.028726,-0.00564,0.004384,0.059925,0.079637,-0.006171,0.017534,-0.030773,-0.013212,-0.021172,-0.008353,0.00691,0.004561,0.015712,-0.006003,-0.003743,-0.003462,-0.012941,-0.026992,-0.007903
C_Italian_ChL:ITA_Grotta_Continenza_CA:RMPR4,0.126344,0.179749,0.02753,-0.070091,0.065551,-0.023985,-0.00047,-0.004384,0.051745,0.092576,-0.001949,0.01124,-0.029732,-0.003165,-0.023208,-0.005436,0.010431,0.002914,0.010307,-0.007629,-0.004866,0.004328,-0.011585,-0.018677,-0.000838
C_Italian_ChL:ITA_Grotta_Continenza_CA:RMPR5,0.126344,0.19092,0.036958,-0.070414,0.072937,-0.032072,0.00047,-0.001154,0.053994,0.100048,-0.003085,0.010341,-0.027354,-0.003441,-0.022258,-0.013126,0.000782,0.00228,0.011439,-0.01138,0.004742,-0.001855,-0.011462,-0.018918,-0.003952
C_Italian_ChL:ITA_Monte_San_Biagio_CA:RMPR1014,0.121791,0.179749,0.031678,-0.061047,0.072321,-0.028726,-0.00893,-0.002769,0.049495,0.092394,0.004384,0.013788,-0.0278,-0.005505,-0.019001,-0.001724,0.0103,0.002407,0.003394,-0.011756,0.009358,0.010634,-0.0053,-0.033258,0.001676
C_Italian_N:ITA_Grotta_Continenza_N:RMPR2,0.126344,0.183811,0.004525,-0.083334,0.056934,-0.047969,-0.01081,-0.013846,0.045404,0.088749,0.006171,0.016635,-0.020664,-0.01156,-0.035152,0.003845,0.035725,0.002914,-0.000251,-0.007629,-0.017968,0.005317,-0.008011,-0.010604,-0.012693
C_Italian_N:ITA_Grotta_Continenza_N:RMPR3,0.118376,0.186857,0.007542,-0.094316,0.055703,-0.042391,-0.011986,-0.004615,0.043359,0.089113,0.010068,0.012739,-0.0278,-0.007432,-0.033523,-0.014187,0.016168,0.005574,0.014832,-0.016008,-0.013975,0.005193,-0.002711,0.005784,-0.008502
C_Italian_N:ITA_Grotta_Continenza_N:RMPR8,0.120652,0.182795,0.011691,-0.082042,0.053856,-0.042112,-0.00376,-0.007615,0.042336,0.08638,-0.003735,0.011989,-0.02334,-0.002615,-0.034202,-0.016971,0.005476,-0.002154,0.008925,-0.014007,-0.005989,0.006801,-0.003821,-0.006145,0.00479
C_Italian_N:ITA_Grotta_Continenza_N:RMPR9,0.120652,0.186857,0.003017,-0.097546,0.052933,-0.046296,-0.001175,-0.011307,0.044995,0.08146,0.007795,0.01139,-0.022299,0.006193,-0.042752,-0.014054,0.01695,-0.00266,0.009176,-0.011005,-0.014474,0.004575,0.002588,0.000964,-0.000359
C_Italian_N:ITA_Grotta_Continenza_N:RMPR10,0.125205,0.180764,0.014708,-0.093993,0.057241,-0.046017,-0.00141,-0.003231,0.041927,0.0831,0.01153,0.015586,-0.02557,-0.008395,-0.034744,-0.015115,0.022948,0.004054,0.010559,-0.016508,-0.011729,-0.001113,-0.00037,-0.008435,0.005987
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR16,0.120652,0.174671,0.019233,-0.068799,0.06432,-0.041555,-0.001645,0.003692,0.039882,0.086744,0.001624,0.019782,-0.029583,-0.007707,-0.022665,0.00053,0.019036,0.011529,0.013701,-0.004752,0.001248,0.011871,-0.015283,-0.017954,0.006107
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR18,0.126344,0.176702,0.004148,-0.085272,0.046162,-0.037371,-0.002115,0.001154,0.047654,0.085833,0.001949,0.018284,-0.034935,0.003028,-0.032573,-0.01127,0.005215,-0.00076,0.006159,-0.014632,-0.006738,0.002349,-0.003204,-0.023136,-0.003952
C_Italian_N:ITA_Ripabianca_di_Monterado_N:RMPR19,0.130897,0.175687,0.012068,-0.07106,0.065551,-0.037092,-0.005405,-0.002308,0.039269,0.086744,-0.002436,0.007643,-0.025124,-0.014175,-0.024158,0.003315,0.023991,0.002534,0.004274,0.005002,-0.008485,-0.002226,-0.009983,-0.019521,0.000599
Minoan:GRC_Minoan_Kephala_Petras:Pta08,0.1161,0.170609,-0.018479,-0.091732,0.028005,-0.033188,0.003995,-0.002769,0.021066,0.060685,0.00747,0.007643,-0.01665,0.010046,-0.03583,-0.02254,0,0.005954,0.009176,-0.009755,-0.009483,0.006059,-0.006902,-0.004217,0.002395
Minoan:GRC_Minoan_Lassithi:I0070,0.121791,0.174671,-0.028284,-0.093993,0.035699,-0.043786,-0.00564,-0.001385,0.003886,0.059956,0.008119,0.016036,-0.018583,-0.001789,-0.027144,-0.00769,0.024773,-0.000507,0.005782,-0.004627,-0.010482,0.003462,-0.005669,0.003374,-0.007065
Minoan:GRC_Minoan_Lassithi:I0071,0.114961,0.167562,-0.016216,-0.088502,0.033237,-0.038487,-0.00188,-0.00923,0.002454,0.056129,0.002761,0.011839,-0.024678,-0.002064,-0.037187,-0.009281,0.02034,-0.00152,0.007793,-0.010255,-0.013601,0.009769,-0.007395,0.005663,-0.002634
Minoan:GRC_Minoan_Lassithi:I0073,0.118376,0.168578,-0.011691,-0.093993,0.022158,-0.034582,-0.00423,-0.002769,0.013703,0.065423,0.003735,0.013788,-0.023637,0.008808,-0.04343,-0.012331,0.016298,-0.007601,0.008925,-0.025637,-0.01123,0.010758,-0.006039,-0.005422,0.000359
Minoan:GRC_Minoan_Lassithi:I0074,0.117238,0.164516,-0.016593,-0.096254,0.025235,-0.044623,0.000705,-0.005077,0.01493,0.060685,0.005196,0.013338,-0.02334,-0.003165,-0.042209,-0.022142,0.004955,0.003674,0.00905,-0.018009,-0.018093,0.007048,-0.010599,-0.006507,0.002275
Minoan:GRC_Minoan_Lassithi:I9005,0.124067,0.177718,-0.018102,-0.097223,0.03139,-0.03765,0.004465,0.001154,0.016771,0.056858,-0.004872,0.021581,-0.035381,-0.002064,-0.037323,-0.003315,0.020601,-0.000253,0.012821,-0.00963,-0.013476,0.010881,0.004314,-0.00241,-0.005149
Minoan:GRC_Minoan_Odigitria_low_res:I9130,0.126344,0.191935,-0.012822,-0.081073,0.051702,-0.036814,-0.005405,0.006923,0.01309,0.056129,0.011854,0.025028,-0.007879,-0.001651,-0.029858,-0.004243,0.004433,0.014569,0.01257,-0.029764,0.007986,-0.00915,-0.010969,-0.006507,-0.01437
Minoan:GRC_Minoan_Odigitria_low_res:I9131,0.133173,0.17264,-0.006411,-0.106268,0.03693,-0.047411,-0.006345,-0.000692,0.001841,0.052484,-0.008769,3e-04,-0.024678,-0.014726,-0.023751,0.00411,0.021644,-0.00152,0.024008,0.005753,-0.011355,0.011252,-0.016022,0.019882,-0.013891
Anatolia_BA:TUR_Isparta_EBA:I2495,0.113823,0.1635,-0.035072,-0.081073,0.002462,-0.024263,0.00188,-0.007615,-0.009817,0.032802,0.003248,0.004796,-0.019475,0.003853,-0.024973,0.006099,0.022296,-0.002534,0.008422,0.006378,-0.007612,0.000618,0.002095,-0.009037,0.000958
Anatolia_BA:TUR_Isparta_EBA:I2499,0.117238,0.152329,-0.04186,-0.077843,-0.008925,-0.025658,-0.000235,-0.004846,-0.015544,0.030251,0.010718,0.002098,-0.004014,-0.011973,-0.021715,0.007823,0.028424,-0.003294,0.008045,-0.002751,-0.004367,-0.00643,0.005176,-0.002048,0.001557
Anatolia_BA:TUR_Isparta_EBA:I2683,0.112685,0.161469,-0.043746,-0.081719,-0.00677,-0.024263,-0.00141,0.000923,-0.009408,0.035901,0.006496,0.003597,-0.014569,-0.001651,-0.020901,-0.004243,0.01356,-0.00152,0.004651,-0.005753,-0.001373,-0.003833,-0.005546,0.001446,-0.009221
Iberomaurusian:MAR_Taforalt:TAF009,-0.162767,0.07718,-0.024513,-0.079135,0.009848,-0.047969,-0.052877,0.020538,0.13294,0.002005,0.025333,-0.026676,0.057978,-0.052985,0.072882,-0.034076,0.002347,-0.05625,-0.130475,0.04152,-0.026204,-0.120314,0.067909,-0.016508,0.012334
Iberomaurusian:MAR_Taforalt:TAF010,-0.193499,0.083273,-0.03017,-0.088502,0.034776,-0.055499,-0.076378,0.019384,0.163619,0.008565,0.02111,-0.030573,0.07879,-0.046104,0.077496,-0.046141,-0.00665,-0.069805,-0.144176,0.036518,-0.042924,-0.129217,0.07629,-0.015303,0.018322
Iberomaurusian:MAR_Taforalt:TAF011,-0.194638,0.085304,-0.021873,-0.088825,0.026774,-0.059961,-0.072148,0.019845,0.161165,0.002551,0.016564,-0.035818,0.080574,-0.051196,0.066367,-0.037523,0.012126,-0.071199,-0.14493,0.035767,-0.041427,-0.12662,0.068279,-0.011447,0.018441
Iberomaurusian:MAR_Taforalt:TAF013,-0.196914,0.082258,-0.026398,-0.088502,0.032314,-0.057173,-0.074733,0.017768,0.156665,0.002369,0.02111,-0.036717,0.077898,-0.052159,0.072746,-0.038584,0.000913,-0.069552,-0.141285,0.039894,-0.035687,-0.125384,0.075428,-0.011206,0.020477
Iberomaurusian:MAR_Taforalt:TAF014,-0.201467,0.079211,-0.018479,-0.083011,0.034468,-0.055499,-0.076848,0.014538,0.162596,0.002005,0.020461,-0.029374,0.078344,-0.054223,0.066503,-0.025192,0.017602,-0.063724,-0.151215,0.04127,-0.042176,-0.126126,0.077153,-0.014339,0.012693
The Sintashta samples from Allentoft et al. don't seem to be there, but (most of) those from Narasimhan et al. are.
 
Target: Riverman_scaled
Distance: 2.5962% / 0.02596216
40.6Yamnaya
29.2C_Italian_ChL
19.4Nordic_BA
4.6Minoan
3.6Remedello
2.6C_Italian_N




Custom PCA with the basic European orientation and your references plotted:

Italian-PCA.jpg


https://ibb.co/cYkvGCN


That's not perfect, because IBM is outside the usual European variation and would plot very differently on a global PCA, but it largely works out for the clearly European components.

@Riverman

I never really understood the G25. Although I know the scathing criticisms to the calculator, I am a curious person and recently I got the scaled and unscaled coordinates from the ILLUSTRATIVE DNA site, indicated by DNA genics. The distances and the sorted populations confuse me a lot, even by a mixed individual like me. I hear that modern samples are not to be trusted as they have not been peer-checked and there is a lack of transparency in the way they were obtained. The usefulness of having different spreadsheets and coordinates, scaled and unscaled, confuses me even more (larger distances for scaled and smaller for non-scaled). I hear that unscaled coordinates work best with modern samples and scaled coordinates work best with old samples. Well, anyway, considering the sample model proposed by Jovialis and transposed to the G25 scaled coordinates, these are my results.

Target: Duarte_scaled
Distance: 2.9374% / 0.02937356
42.8Remedello
17.6Catacomb
10.8C_Italian_N
10.0Iberomaurusian
9.0Nordic_BA
8.6Yamnaya
1.2C_Italian_ChL
 
Germanic and Slavic make sense (although Balkans should have some Germanic ancestry from Goths, at least 5-15%). West Balkan and East Balkan make no sense at all. Why are Sardinians so high in "East Balkan"? Germans and Belgians have more "West Balkan" than Albanians.

You designed a calculator to design a division between "West Balkan" and "East Balkan" and ended up designing a calculator that's only accurate for Germanic and Slavic. Like it's been mentioned multiple times, that Bulgarian IA or whatever is some weird outlier that has little to do with modern populations. It shouldn't be used as a reference point.

Maciamo commented on this years ago

Are you for real? There is nothing outliying about Bulgarian IA and it's incorrect they don't score any steppe, lmao.

that Thracian sample is 23% steppe, and it plots closest to modern Italians. nothing weird or outstanding about it
and yeah, we got actual west Balkan samples, they all plot the way they do, your coping won't change that fact
 
In my mind those ph2ter maps confirm the suspicions I expressed to you over at anthrogenica. I hope you have enough intellectual empathy to understand my pov.

Edit: For the others that did not follow our discussions there.
1. You are employing ghost populations made of averages. Populations that might not have existed.
2. You are picking and choosing which samples represent what to fit the hypothesis, rather than test it.
a)Slavic average you have looks Baltic
b)West Balkan average looks anything but West Balkans (in fact my criticism was that you arrived at this conclusion excluding much better fitting samples, while at the same time relying on anachronism(LBA Panonians, IA Croatians... and synthetic averaging)
c)Your hypothesis about E-V13 is the basis the synthesizing and averaging of the East Balkan components, so the model would naturally churn out Albanians as overwhelmingly East Balkan.

My hope is this is just confirmation bias and nothing sinister, but as you read from my edit of the comment over at Anthro, when I tried to replicate your model without some of the flaws it fell apart.

Try this:
Make it a BA+IA model, so that way you can keep the LBA Panonians, while at the same time satisfy the MBA-LBA Croatians. Use individual samples so we are not dealing in synthetic populations that might not have existed and test your hypothesis?

Its either that, or I think once the Southern Arch paper comes out and you compare your averages to actual representative samples, some of which you named but quite a few you did not, your model might fall apart.

west Balkan individual samples are almost all identical and highly homogenous, so nope, their average isn't any different than individual samples that make them
even samples from south dalmatia close to montenegro plot the same, like far northern Italians

early slavs were like balts, nothing weird about that either. all these samples are slavs and got nothing to do with actual balts
 
West Balkan is related to Celtic, that's why. Its the ancestry of the MBA-EIA Tumulus culture and Urnfield groups. If you check them on a PCA, they just score fairly Western, which is why they approach more Southern Celtic ancestry, which Germans have. If you check Croatians and Slovenians, or Hungarians, they all score like that.
The Central and Eastern Balkan were respectively closer to each other. You need to know the background of this groups before judging that way.

But of course, its just an experiment and not to be taken all too serious. But I guess the main problem is not that my concept is that flawed, but that we lack some crucial (Central and Eastern Balkan in particular) samples. From the Central Balkan we have zero and from the Eastern Balkan only two proxies. Therefore there can't be an optimal model at this point.

Actual Croats don't score west Balkan IA. Croatian average consists of people from capital mixed with Germans.
I doubt slovenians have any west balkan either, they just have balkan with german-celtic admix and when you mix that two you get close to west balkan IA

Thracians are much better fit for south slavs. illyrian population got rekt
 
@Riverman

I never really understood the G25. Although I know the scathing criticisms to the calculator, I am a curious person and recently I got the scaled and unscaled coordinates from the ILLUSTRATIVE DNA site, indicated by DNA genics. The distances and the sorted populations confuse me a lot, even by a mixed individual like me. I hear that modern samples are not to be trusted as they have not been peer-checked and there is a lack of transparency in the way they were obtained.

The larger the samples the better. Just recently there were medical samples from Hamburg and Erlangen published and converted into G25. The usefulness of G25 can easily be shown by looking at those individual samples. Its easy to sort out the outliers and those which don't fit into the regional pattern. Again, the larger the sample size, the easier it gets. Peer review became by now discredited in a lot of instance, you can't trust any source just like that, you always have to check yourself or by trusted parties. Point is, G25 is useful and reliable in and by itself, as for the samples, it differs. David usually used the better ones available, but for some people, there is just a lack of good samples or even peer reviewed studies included a lot of outliers which distort the results.
This is something G25 itself can correct, by simply checking for outliers.
Like if a sample from Hamburg gets more 80 percent Slavic, it won't be from a local Northern German farmer lineage, I guarantee you that.

The usefulness of having different spreadsheets and coordinates, scaled and unscaled, confuses me even more (larger distances for scaled and smaller for non-scaled). I hear that unscaled coordinates work best with modern samples and scaled coordinates work best with old samples. Well, anyway, considering the sample model proposed by Jovialis and transposed to the G25 scaled coordinates, these are my results.

Like with any new tool or product, you need to get used to it. From my point of view, unscaled is better if the distances are very big and you search for more exotic admixture, while scaled is the better choice within a set of related components, like intra-European. That's why I would primarily use scaled in the European context, but if people have extra-European ancestry, unscaled might work better sometimes.
 
Target: Riverman_scaled
Distance: 2.5962% / 0.02596216
40.6Yamnaya
29.2C_Italian_ChL
19.4Nordic_BA
4.6Minoan
3.6Remedello
2.6C_Italian_N




Custom PCA with the basic European orientation and your references plotted:

Italian-PCA.jpg


https://ibb.co/cYkvGCN


That's not perfect, because IBM is outside the usual European variation and would plot very differently on a global PCA, but it largely works out for the clearly European components.

By IBM, I assume you mean Iberomaurusian. On the contrary, it is a very important component that is the only way to definitively gauge North African/Levantine admixture. Natufian is inadequate because there's too much overlap with Anatolia_N.


Natufians are 73% Anatolia_N-like (Dzudzuana), and the rest is Iberomaurusian.


Many studies use Iberomaurusian as one of the ultimate source populations for west Eurasians.
 
^^Also, check out that same PCA you made in 3D, because Iberomaurusian is radically shifted down on the Z axis, and it isn't appropriately projected in 2D.

UxoqJY4.png


Here is what I mean, it seems to do a good job at demonstrating how different Bolshoy_Ostrov and Iberomaurusian are. However, just look at the jumbling of the Farmer ancestry. This is why imho, Dodecad is the superior calculator for Southern Europeans.

Anatolia_BA, "North" of Minoans. C_Italian_N and ChL south of Minoans. This is not correct.

Here is the Dodecad PCA for comparison:

hZEY4dY.png
 
^^Also, check out that same PCA you made in 3D, because Iberomaurusian is radically shifted down on the Z axis, and it isn't appropriately projected in 2D.

Yes I know, but it gets only properly positioned with extra-European, which pushes the others in a corner.
 
I don't know what you mean. At any rate, post 32 demonstrates my point.

I just used the basic European components, which makes IBM very Neolithic like. If I would have done a PCA with extra-European, especially Subsaharan, they would plot completely different.
Its therefore not G25 missing, I just made a European framework to which IBM doesn't (fully) belong.
 
@Riverman

I never really understood the G25. Although I know the scathing criticisms to the calculator, I am a curious person and recently I got the scaled and unscaled coordinates from the ILLUSTRATIVE DNA site, indicated by DNA genics. The distances and the sorted populations confuse me a lot, even by a mixed individual like me. I hear that modern samples are not to be trusted as they have not been peer-checked and there is a lack of transparency in the way they were obtained. The usefulness of having different spreadsheets and coordinates, scaled and unscaled, confuses me even more (larger distances for scaled and smaller for non-scaled). I hear that unscaled coordinates work best with modern samples and scaled coordinates work best with old samples. Well, anyway, considering the sample model proposed by Jovialis and transposed to the G25 scaled coordinates, these are my results.

Target: Duarte_scaled
Distance: 2.9374% / 0.02937356
42.8Remedello
17.6Catacomb
10.8C_Italian_N
10.0Iberomaurusian
9.0Nordic_BA
8.6Yamnaya
1.2C_Italian_ChL

Why do you score so much, 10% Iberomaurusian?
 
I just used the basic European components, which makes IBM very Neolithic like. If I would have done a PCA with extra-European, especially Subsaharan, they would plot completely different.
Its therefore not G25 missing, I just made a European framework to which IBM doesn't (fully) belong.
That's because SSA breaks the projection when you put them against West Eurasians.

There's nothing wrong with my modeling. It is used in recent papers, including the Antonio paper, which those Imperial samples are from. I think you are missing the point.
 

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