Angela
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Realize those Helladic samples had higher Steppe particularly the ones from Northeast Greece where there was close proximity to Balkan Bronze age populations. I actually plot really close to one of the Logkas samples (55-33 EEF/IE minor CHG) as would most modern mainlanders (for different reasons) so possibly the Steppe element may not have made it that far South during the Bronze Age. It would make more sense to me (novice op) that the proto Greeks (Pelasgians or whatever) who were most likely centered in the more remote areas of the Peloponnese were harboring high EEF (leftover from the Neolithic).
Log 4 and Log 2 are quite different from the Mycenaeans, and even from modern Greeks. Log 4 is not that far from me, in fact.
Fwiw, I don't see the big difference between Crete and the mainlanders.