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New K53 Admixture calculator

T

Tomenable

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Location
Poland
Ethnic group
Polish
Y-DNA haplogroup
R1b-L617
mtDNA haplogroup
W6a
I have created a K53 (with 53 components) Supervised ADMIXTURE calculator. The calculator is using 621,800 SNPs.

If you want me to check your results in this calculator, send your raw data to: [email protected]

Here is the list of components:

I. Components in Europe:

1. North_Atlantic ----- (based on Irish people)
2. North_Sea ----- (based on Norwegians)
3. Fennoscandian ----- (Finns)
4. Baltic ----- (Lithuanians)
5. East_Central_Euro ----- (Poles)
6. Eastern_Euro ----- (Belarusians and East Ukrainians)
7. French ----- (Central French)
8. Biscay ----- (Basques)
9. West_Med ----- (Spanish)
10. Sardinian ----- (Sardinians)
11. Central_Med ----- (North Italians)
12. Balkan ----- (Albanians)
13. East_Med ----- (Cypriots and Greek Islanders)
14. Volga_Ural ----- (Chuvash)
15. North_Caucasus ----- (Chechens, North Ossetians, Kumyks, Lezgins, Adyghe, Balkars)

II. Components in the MENA:

16. West_Caucasus ----- (Georgians, Abkhasians and Armenians)
17. Levantine ----- (Lebanese Christians and Druze)
18. Near_Eastern ----- (Jordanians, Lebanese Muslims, Palestinians)
19. Mesopotamian ----- (Assyrians)
20. Arabian ----- (Yemenis and BedouinsB)
21. Iranian ----- (Iranians)
22. Gedrosian ----- (Brahui and Balochi)
23. Maghrebian ----- (Mozabite Berbers)

III. Components in South Asia:

24. South_Indian ----- (Mala)
25. North_Indian ----- (Lodhi)
26. South_Asian_Munda ----- (Kharia)
27. Bengalian ----- (Bengalis)

IV. Components in Central Asia:

28. South_Central_Asian ----- (Burusho and Pathan)
29. East_Central_Asian ----- (Mongola, Daur, Hezhen, Oroqen, Tu and Kalmyks)

V. Components in East Asia and Southeast Asia:

30. North_East_Asian ----- (Koreans and Japanese)
31. South_Chinese ----- (Dai, She, Miao, Lahu)
32. Austronesian ----- (Atayal and Ami)
33. Indo_Chinese ----- (Cambodians and Thais)
34. Tibeto_Burman ----- (Yi and Naxi)
35. Andamanese ----- (Onge)

VI. Components in the SSA:

36. West_African ----- (Mandenka, Mende, Gambians)
37. Saharan ----- (Dinka)
38. Northeast_African ----- (Somali)
39. East_African ----- (Masai)
40. Pygmy ----- (Biaka and Mbuti Pygmies)
41. East_African_HG ----- (Hadza and Sandawe)
42. South_African ----- (Nama)

VII. Components in Russia / Siberia:

43. Siberian ----- (Nganasan, Yakut, Koryak, Itelmen, Yukagir)
44. Tungusic ----- (Ulchi)
45. Altaian ----- (Tubalars)

VIII. Components in the Americas:

46. Arctic_Amerind ----- (Inuits / Eskimos)
47. Subarctic_Amerind ----- (Chipewyan)
48. North_Amerind_NE ----- (Ojibwa, Cree, Algonquin)
49. North_Amerind_SW ----- (Pima)
50. Meso_Amerind ----- (Maya and one more tribe)
51. South_Amerind ----- (Piapoco and a few more tribes)
52. Andean_Amerind ----- (Quechuas, Aymaras, Bolivians)

IX. Components in Oceania:

53. Sahulian ----- (Papuans, Nasioi and Australian Aborigines)
 
I will probably update this calculator by adding a German component. So it will be K54 after the update.

However, the only German samples available in the dataset which I'm using are Germans from Leipzig.

=====

Edit:

I'm going to update this calculator so feel free to suggest what could be changed, maybe I will follow your advice.
 
Last edited:
Just tried to send
 
^^^
Your results (I have updated to K55):

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.48% South_African
0.00% Siberian
0.00% Arctic_Amerind
0.00% North_Amerind_NE
0.26% East_African_HG
0.00% Tungusic
0.00% Altaian
1.73% Gedrosian
0.00% South_Central_Asia
0.03% Central_African_HG
5.69% French
0.00% Sahulian
0.00% Levantine
1.02% Arabian
1.24% Sardinian
0.01% Near_Eastern
0.00% South_Amerind
0.00% Indo_Chinese
0.00% North_East_Asian
0.00% West_African
0.00% North_Amerind_SW
4.78% Central_Med
0.00% Tibeto_Burman
0.00% South_Chinese
0.00% East_Central_Asian
0.00% Maghrebian
4.91% Biscay
2.59% North_Caucasus
0.00% Northeast_African
0.00% Meso_Amerind
0.00% Andean_Amerind
0.00% Saharan_Nilotic
0.00% Andamanese
0.00% South_Indian
0.00% South_Asian_Munda
0.03% North_Indian
8.75% Baltic
0.00% Iranian
1.05% West_Caucasus
1.82% Armenian
8.93% Eastern_Euro
3.58% Volga_Ural
0.00% Austronesian
0.00% East_African
0.33% East_Med
0.00% Subarctic_Amerind
10.58% North_Atlantic
7.66% West_Med
5.06% Fennoscandian
0.00% Bengalian
12.00% North_Sea
3.67% Balkan
4.03% East_Central_Euro
9.50% Central_Euro
0.23% Mesopotamian

CPU time = 474.50 sec
 
Tomenable said:
^^^
Your results (I have updated to K55):

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------
Click to expand...

Thank you. This confirms my research with a depth I haven't really seen yet. Awesome
 
Tomenable said:
I have created a K53 (with 53 components) Supervised ADMIXTURE calculator. The calculator is using 621,800 SNPs.

If you want me to check your results in this calculator, send your raw data to: [email protected]

Here is the list of components:

I. Components in Europe:

1. North_Atlantic ----- (based on Irish people)
2. North_Sea ----- (based on Norwegians)
3. Fennoscandian ----- (Finns)
4. Baltic ----- (Lithuanians)
5. East_Central_Euro ----- (Poles)
6. Eastern_Euro ----- (Belarusians and East Ukrainians)
7. French ----- (Central French)
8. Biscay ----- (Basques)
9. West_Med ----- (Spanish)
10. Sardinian ----- (Sardinians)
11. Central_Med ----- (North Italians)
12. Balkan ----- (Albanians)
13. East_Med ----- (Cypriots and Greek Islanders)
14. Volga_Ural ----- (Chuvash)
15. North_Caucasus ----- (Chechens, North Ossetians, Kumyks, Lezgins, Adyghe, Balkars)

II. Components in the MENA:

16. West_Caucasus ----- (Georgians, Abkhasians and Armenians)
17. Levantine ----- (Lebanese Christians and Druze)
18. Near_Eastern ----- (Jordanians, Lebanese Muslims, Palestinians)
19. Mesopotamian ----- (Assyrians)
20. Arabian ----- (Yemenis and BedouinsB)
21. Iranian ----- (Iranians)
22. Gedrosian ----- (Brahui and Balochi)
23. Maghrebian ----- (Mozabite Berbers)

III. Components in South Asia:

24. South_Indian ----- (Mala)
25. North_Indian ----- (Lodhi)
26. South_Asian_Munda ----- (Kharia)
27. Bengalian ----- (Bengalis)

IV. Components in Central Asia:

28. South_Central_Asian ----- (Burusho and Pathan)
29. East_Central_Asian ----- (Mongola, Daur, Hezhen, Oroqen, Tu and Kalmyks)

V. Components in East Asia and Southeast Asia:

30. North_East_Asian ----- (Koreans and Japanese)
31. South_Chinese ----- (Dai, She, Miao, Lahu)
32. Austronesian ----- (Atayal and Ami)
33. Indo_Chinese ----- (Cambodians and Thais)
34. Tibeto_Burman ----- (Yi and Naxi)
35. Andamanese ----- (Onge)

VI. Components in the SSA:

36. West_African ----- (Mandenka, Mende, Gambians)
37. Saharan ----- (Dinka)
38. Northeast_African ----- (Somali)
39. East_African ----- (Masai)
40. Pygmy ----- (Biaka and Mbuti Pygmies)
41. East_African_HG ----- (Hadza and Sandawe)
42. South_African ----- (Nama)

VII. Components in Russia / Siberia:

43. Siberian ----- (Nganasan, Yakut, Koryak, Itelmen, Yukagir)
44. Tungusic ----- (Ulchi)
45. Altaian ----- (Tubalars)

VIII. Components in the Americas:

46. Arctic_Amerind ----- (Inuits / Eskimos)
47. Subarctic_Amerind ----- (Chipewyan)
48. North_Amerind_NE ----- (Ojibwa, Cree, Algonquin)
49. North_Amerind_SW ----- (Pima)
50. Meso_Amerind ----- (Maya and one more tribe)
51. South_Amerind ----- (Piapoco and a few more tribes)
52. Andean_Amerind ----- (Quechuas, Aymaras, Bolivians)

IX. Components in Oceania:

53. Sahulian ----- (Papuans, Nasioi and Australian Aborigines)
Click to expand...
Do you still accept submissions? Can I send you mine?
 
Results for Who Cares?:

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.02% South_African
0.00% Siberian
0.00% Arctic_Amerind
0.00% North_Amerind_NE
0.06% East_African_HG
0.00% Tungusic
0.00% Altaian
0.03% Gedrosian
0.49% South_Central_Asia
0.00% Central_African_HG
6.75% French
0.00% Sahulian
2.11% Levantine
2.33% Arabian
4.95% Sardinian
3.80% Near_Eastern
0.00% South_Amerind
0.00% Indo_Chinese
0.00% North_East_Asian
0.00% West_African
0.00% North_Amerind_SW
7.46% Central_Med
0.00% Tibeto_Burman
0.00% South_Chinese
0.00% East_Central_Asian
0.55% Maghrebian
4.88% Biscay
4.77% North_Caucasus
0.00% Northeast_African
0.17% Meso_Amerind
0.00% Andean_Amerind
0.00% Saharan_Nilotic
0.00% Andamanese
0.02% South_Indian
0.00% South_Asian_Munda
0.29% North_Indian
4.41% Baltic
2.48% Iranian
2.64% West_Caucasus
2.60% Armenian
5.17% Eastern_Euro
0.82% Volga_Ural
0.31% Austronesian
0.08% East_African
5.43% East_Med
0.00% Subarctic_Amerind
3.57% North_Atlantic
5.18% West_Med
3.22% Fennoscandian
0.01% Bengalian
3.97% North_Sea
7.84% Balkan
3.50% East_Central_Euro
5.13% Central_Euro
4.97% Mesopotamian

CPU time = 1011.83 sec
 
Tomenable said:
Results for Who Cares?:

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

0.02% South_African
0.00% Siberian
0.00% Arctic_Amerind
0.00% North_Amerind_NE
0.06% East_African_HG
0.00% Tungusic
0.00% Altaian
0.03% Gedrosian
0.49% South_Central_Asia
0.00% Central_African_HG
6.75% French
0.00% Sahulian
2.11% Levantine
2.33% Arabian
4.95% Sardinian
3.80% Near_Eastern
0.00% South_Amerind
0.00% Indo_Chinese
0.00% North_East_Asian
0.00% West_African
0.00% North_Amerind_SW
7.46% Central_Med
0.00% Tibeto_Burman
0.00% South_Chinese
0.00% East_Central_Asian
0.55% Maghrebian
4.88% Biscay
4.77% North_Caucasus
0.00% Northeast_African
0.17% Meso_Amerind
0.00% Andean_Amerind
0.00% Saharan_Nilotic
0.00% Andamanese
0.02% South_Indian
0.00% South_Asian_Munda
0.29% North_Indian
4.41% Baltic
2.48% Iranian
2.64% West_Caucasus
2.60% Armenian
5.17% Eastern_Euro
0.82% Volga_Ural
0.31% Austronesian
0.08% East_African
5.43% East_Med
0.00% Subarctic_Amerind
3.57% North_Atlantic
5.18% West_Med
3.22% Fennoscandian
0.01% Bengalian
3.97% North_Sea
7.84% Balkan
3.50% East_Central_Euro
5.13% Central_Euro
4.97% Mesopotamian

CPU time = 1011.83 sec
Click to expand...
Cool. Looks like spread all over. Definitively not what I thought it would be.
 
Who Cares? said:
Cool. Looks like spread all over. Definitively not what I thought it would be.
Click to expand...

Yes I'm still working on this calculator. I think I will make a new calculator with fewer components but more samples per component. In this calculator I used 10 samples (10 individuals) per each component, which might be a too small number.

However, an Australian Aboriginal individual does score >70% of Sahulian component:

----------------------------
FINAL ADMIXTURE PROPORTIONS:
----------------------------

3.64% South_African
1.06% Siberian
0.77% Arctic_Amerind
0.27% North_Amerind_NE
1.42% East_African_HG
0.20% Tungusic
0.00% Altaian
0.00% Gedrosian
0.00% South_Central_Asia
1.29% Central_African_HG
0.01% French
70.83% Sahulian
0.00% Levantine
0.00% Arabian
0.00% Sardinian
0.00% Near_Eastern
0.00% South_Amerind
1.54% Indo_Chinese
2.28% North_East_Asian
0.47% West_African
0.00% North_Amerind_SW
0.00% Central_Med
2.51% Tibeto_Burman
0.09% South_Chinese
0.00% East_Central_Asian
0.02% Maghrebian
0.00% Biscay
0.00% North_Caucasus
0.53% Northeast_African
0.00% Meso_Amerind
0.00% Andean_Amerind
0.49% Saharan_Nilotic
3.05% Andamanese
3.04% South_Indian
3.49% South_Asian_Munda
0.73% North_Indian
0.00% Baltic
0.00% Iranian
0.00% West_Caucasus
0.00% Armenian
0.00% Eastern_Euro
0.01% Volga_Ural
1.42% Austronesian
0.72% East_African
0.00% East_Med
0.00% Subarctic_Amerind
0.00% North_Atlantic
0.00% West_Med
0.02% Fennoscandian
0.05% Bengalian
0.00% North_Sea
0.00% Balkan
0.00% East_Central_Euro
0.00% Central_Euro
0.05% Mesopotamian

CPU time = 599.77 sec

^^^ It is this one: http://gigadb.org/dataset/100010
 
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