Recent content by Lukas

New url for tool https://www.allelocator.ovh/K36vertical.html https://www.allelocator.ovh/simulatedg25.html

new link https://www.allelocator.ovh/Taux%20de%20Similitude.htm

new link https://www.allelocator.ovh/Tool%20for%20Eurogenes%20K36%20-%20Timeline.htm

You can do everything in https://usegalaxy.org/ online:) Just create free account there. It is especially useful for fastq academic files hosted on ENA when there are no bams only fastq files. But you can also upload there your wgs file. But I show first how to convert ancient samples from ENA...

You don't need to convert to VCF to have PLINK files. Just use this command in PLINK on 23andme_txt file. plink --23file your_raw.txt --chr 1-22 --make-bed --out newplinkfile Flag --chr 1-22 is optional but you can have error regarding raw created from WGS about Y, X, MT rows and you don't...

I got best fit using sims made from K47 result using this script. But even better fit is here with Vbknethio K36 to G25 converter https://allelocator.ovh/K36horizontal.html

Also there is improved version of 2-way Oracle model (autor: ngansankhan) on Allelocator. Previous version of vbknethio was much slower... https://allelocator.ovh/Oracle2way.html

Still first version based on K36 (author: vbknethio) is on-line too https://allelocator.ovh/K36horizontal.html

On Allelocator is added new script (author: Nganasankhan) which allows creation G25 simulated coords from most Gedmatch / Admixture Studio calculators. https://allelocator.ovh/simulatedg25.html You can use results from any calc from the list below: Eurogenes K13 Eurogenes K15...

checking next one R11790.SG Kerkouane 761 calBCE - 405.5 calBCE Tunisia Iron Age Distance to: 11790 1.87469570 FR_Corsica 2.05879761 IT_southern_Sardinian 2.09279612 ES_Canarias 2.11039436 Portugal_Norte 2.11402634 IT_Lazio 2.11537580 IT_Liguria 2.11817775...

G25_sim...

https://www.biorxiv.org/content/10.1101/2022.03.13.483276v2.full The Iron Age saw the expansion of Phoenician and Greek colonies across the Mediterranean and the rise of Carthage as the major maritime power of the region. These events were facilitated by the ease of long-distance travel...

https://culture.pl/en/article/7-most-polish-cities-outside-of-poland First is Chicago (1,5 mln) ofc. Second largest Polish city outside Poland is Curitiba in Brasil (about 400 000 with Polish roots). Third Paris (300 000). Fourth New York (218 000). Fifth toronto (200 000).

I think better to show results of the run as: Mycenaeans: Greece_Minoan_Lassithi 81.7% Iran_GanjDareh_N 5,2% Russia_Samara_EBA_Yamnaya 12% then left: results: Most people don't see this.

Thank you, great work.