Angela
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Just for clarification, as Nobody 1 pointed out, the light skin pigmentation snp for which Stuttgart (and Oetzi) tested positive and for which Loschbour and La Brana, and Malta, tested negative, and which has reached fixation in Europe, is SLC 24A5, not the SLC42A5 which was tested in this paper. SLC42A5 has not quite reached fixation, although it's close...97% in the last study I saw.
Also, neither SLC24A5 nor SLC42A5 have anything to do with fair skin in East Asians. They have totally different color draining snps.
This is the global distribution of SLC24A5:
http://upload.wikimedia.org/wikipedia/commons/8/8e/Ala111Thr_allele_frequency_distribution0.png
This is the global distribution of many of these snps from the Norton et al 2007 paper; 374G is SLC42A5.
http://mbe.oxfordjournals.org/content/24/3/710/F3.expansion.html
Global maps for the distribution of some of these eye color snps are here:
http://scienceblogs.com/gnxp/2009/07/20/japanese-are-brown-eyed-a-bit/
This is a well known table from Norton et al of some color draining snps in Hap Map populations, including TYR. Go to Supplementary Table 2.
That said, I don't see why the mechanism would have been any different, i.e. neolithic diet combined with selection in areas with less sunlight.
Anyway, as to these pigmentation snps, I never expected people with high ANE (Malta like) levels who came late to agriculture to be predominantly very light skinned. (If indeed we propose that ANE did arrive with the "Indo-Europeans"? After all, if it didn't come with them, with whom would it have arrived, and when? And the popular theory is still that the "Indo-Europeans" were Yamnaya people who came up the Danube, into Central Europe, and then spread out from there? )
So, what light pigmentation snps they would have picked up would have come from farmers.
In terms of the Eurogenes quote, maybe someone can help me out here, because it doesn't make much sense to me. Why would populations east of eastern Europe, which would presumably be more hunter-gatherer, more ANE, be lighter skinned? Also, I don't understand the reference to Kurgan peoples in southern Siberia. This table is from Jean Manco's Ancestral Journeys...the samples that carry light pigmentation genes are from 1800 B.C. Are there others of which I'm not aware?
http://www.ancestraljourneys.org/autosomaladna.shtml
Also, forgive me if I'm off base here, as this isn't a topic that I've spent much time on, but isn't the prevailing view among the hobbyists that Andronovo is a descendant culture of Yamnaya? That's certainly the point of view, or used to be, anyway, of the Eurogenes blogger. The Yamnaya samples in this current paper date to between 3000 to 2500 BC. So, wouldn't it make sense if Andronovo descends from Yamnaya, that people from the "lighter" of these two groups, the Yamnaya group, who moved east to Andronovo might, more than a thousand years later, due to selection, be 60% "light"?
I hate to cite Wiki, but I'm pressed for time:
http://en.wikipedia.org/wiki/Karasuk_culture
http://en.wikipedia.org/wiki/Andronovo_culture
As to why mtDNA V is proving scarce in ancient dna samples, I think that contrary to what was earlier believed, mtDNA V is relatively young, as per Behar et al.
It's interesting that mtDNA U4, which is such a northeastern European marker, is only present, and at high numbers, in the Catacombe culture, which is the "darker" of the two, at least going by these samples.
Also, neither SLC24A5 nor SLC42A5 have anything to do with fair skin in East Asians. They have totally different color draining snps.
This is the global distribution of SLC24A5:
http://upload.wikimedia.org/wikipedia/commons/8/8e/Ala111Thr_allele_frequency_distribution0.png
This is the global distribution of many of these snps from the Norton et al 2007 paper; 374G is SLC42A5.
http://mbe.oxfordjournals.org/content/24/3/710/F3.expansion.html
Global maps for the distribution of some of these eye color snps are here:
http://scienceblogs.com/gnxp/2009/07/20/japanese-are-brown-eyed-a-bit/
This is a well known table from Norton et al of some color draining snps in Hap Map populations, including TYR. Go to Supplementary Table 2.
That said, I don't see why the mechanism would have been any different, i.e. neolithic diet combined with selection in areas with less sunlight.
Anyway, as to these pigmentation snps, I never expected people with high ANE (Malta like) levels who came late to agriculture to be predominantly very light skinned. (If indeed we propose that ANE did arrive with the "Indo-Europeans"? After all, if it didn't come with them, with whom would it have arrived, and when? And the popular theory is still that the "Indo-Europeans" were Yamnaya people who came up the Danube, into Central Europe, and then spread out from there? )
So, what light pigmentation snps they would have picked up would have come from farmers.
In terms of the Eurogenes quote, maybe someone can help me out here, because it doesn't make much sense to me. Why would populations east of eastern Europe, which would presumably be more hunter-gatherer, more ANE, be lighter skinned? Also, I don't understand the reference to Kurgan peoples in southern Siberia. This table is from Jean Manco's Ancestral Journeys...the samples that carry light pigmentation genes are from 1800 B.C. Are there others of which I'm not aware?
http://www.ancestraljourneys.org/autosomaladna.shtml
Also, forgive me if I'm off base here, as this isn't a topic that I've spent much time on, but isn't the prevailing view among the hobbyists that Andronovo is a descendant culture of Yamnaya? That's certainly the point of view, or used to be, anyway, of the Eurogenes blogger. The Yamnaya samples in this current paper date to between 3000 to 2500 BC. So, wouldn't it make sense if Andronovo descends from Yamnaya, that people from the "lighter" of these two groups, the Yamnaya group, who moved east to Andronovo might, more than a thousand years later, due to selection, be 60% "light"?
I hate to cite Wiki, but I'm pressed for time:
http://en.wikipedia.org/wiki/Karasuk_culture
http://en.wikipedia.org/wiki/Andronovo_culture
As to why mtDNA V is proving scarce in ancient dna samples, I think that contrary to what was earlier believed, mtDNA V is relatively young, as per Behar et al.
It's interesting that mtDNA U4, which is such a northeastern European marker, is only present, and at high numbers, in the Catacombe culture, which is the "darker" of the two, at least going by these samples.