Idontknowwhatimdoing
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- Greek Cypriot
These models do not imply direct ancestry, they only show the shifts. On the left i calculated indirect stuff from the proxies. I modelled Italians without South Slavic and Turkic and Greeks without Italy iron age Italy. The Antiquity Greek proxy are the Rome_Imperial samples without Levantine, Armenian, North African, Northern outliers. Basically only the Greek ones who cluster with Greek islanders/Anatolians are included, i also removed the ones that had some North African admix.
Before some of you claim that G25 is a "fraud", scroll down and see the Cypriot G25 results compared to qpAdm. They are the same. You have to remember that G25 is not meant for Mesolithic-Neolithic modelling, Neolithic G25 models are misleading but models with more recent stuff such as the models below are very accurate.
Almost all of the Eastern Imperial admixture in Italians seems to be directly from Greeks. I remember a paper was wrongly claiming that these people came from all over the Empire? Lol, they were just Greek West Anatolians. I checked all the Rome Imperial samples, most of them seem to be Greek West Anatolians and islander like, there were much more direct Greek West Anatolian samples in Imperial Rome than direct Levantine.
The shifts that happened over time in Rome vs modern Italian. The Imperial Greek profile was diluted a bit from North Italians and that formed the modern central Italian profile.
For the people that are spreading misinformation that the Imperial Greek profile existed in Sicily from the Bronze-Iron age and that it did not come from Anatolian Greeks or just Bronze Age Anatolians. As you can see, that is completely false. Dont mind the use of the 1000ad Slavic proxy, im just showing the shifts. There was no significant Anatolian Bronze Age in imperial Italy. Anatolia was already mixed between West and East in the Iron Age which recreated a similar profile to the Bronze Age Anatolians. Stop this nonsense. Just because a study fitted models with Anatolia BA, it does not make it true that Italians have literal direct Anatolia BA.
Check the shifts (does not imply direct ancestry).
Where are the Bronze and Iron Age Sicilians clustering with the Rome Imperial samples? Why are there none if there was such a magical high CHG Anatolian Bronze age migration?
Comparing the shifts with qpAdm for the people claiming that G25 is fake. I used Cypriots because they are easier to model, without crazy high SE.
Same model but with a Slavic proxy. The G25 model is basically identical to qpADM
The imperial samples i used.
My qpAdm .ind file if you want to check the sample ID's
https://www.mediafire.com/file/w2icozps2prs847/v54.1_HO_public.ind/file
G25 calculator coordinates:
(You are not supposed to use them all at the same time in every model, to avoid overfits)
Before some of you claim that G25 is a "fraud", scroll down and see the Cypriot G25 results compared to qpAdm. They are the same. You have to remember that G25 is not meant for Mesolithic-Neolithic modelling, Neolithic G25 models are misleading but models with more recent stuff such as the models below are very accurate.
Almost all of the Eastern Imperial admixture in Italians seems to be directly from Greeks. I remember a paper was wrongly claiming that these people came from all over the Empire? Lol, they were just Greek West Anatolians. I checked all the Rome Imperial samples, most of them seem to be Greek West Anatolians and islander like, there were much more direct Greek West Anatolian samples in Imperial Rome than direct Levantine.
The shifts that happened over time in Rome vs modern Italian. The Imperial Greek profile was diluted a bit from North Italians and that formed the modern central Italian profile.
For the people that are spreading misinformation that the Imperial Greek profile existed in Sicily from the Bronze-Iron age and that it did not come from Anatolian Greeks or just Bronze Age Anatolians. As you can see, that is completely false. Dont mind the use of the 1000ad Slavic proxy, im just showing the shifts. There was no significant Anatolian Bronze Age in imperial Italy. Anatolia was already mixed between West and East in the Iron Age which recreated a similar profile to the Bronze Age Anatolians. Stop this nonsense. Just because a study fitted models with Anatolia BA, it does not make it true that Italians have literal direct Anatolia BA.
Check the shifts (does not imply direct ancestry).
Where are the Bronze and Iron Age Sicilians clustering with the Rome Imperial samples? Why are there none if there was such a magical high CHG Anatolian Bronze age migration?
Comparing the shifts with qpAdm for the people claiming that G25 is fake. I used Cypriots because they are easier to model, without crazy high SE.
Same model but with a Slavic proxy. The G25 model is basically identical to qpADM
Code:
right = c('Mbuti.DG', 'Russia_Ust_Ishim.DG', 'Russia_DevilsCave_N.SG', 'Russia_MA1_HG.SG', 'Czech_Vestonice16', 'Morocco_Iberomaurusian', 'Serbia_IronGates_Mesolithic', 'Russia_Samara_EBA_Yamnaya', 'Anatolia_Neolithic_6000_BC', 'Jordan_PPNB', 'Iran_GanjDareh_N', 'Croatia_MBA', 'Levant_BA_1900_1500_BC', 'Mycenaean_Greek_1500_1050_BC', 'Minoan_Crete_2600_1700_BC', 'Turkey_Hellenistic_Halikarnassos', 'Latvia_BA', 'Russia_IA_Ingria.SG', 'Albania_1500_400_BC', 'North_Macedonia_500_100_BC')
left = c('Aegean_Imperial_1_200ad', 'Levant_BA_1900_1500_BC_Sidon', 'Russia_Sunghir_Medieval.SG')
target = c('Greek_Cypriot')
results = qpadm(prefix, left, right, target, allsnps = TRUE)
results$weights
results$popdrop
--------------------------------------------------
P 0.157
target left weight se z
<chr> <chr> <dbl> <dbl> <dbl>
1 Greek_Cypriot Aegean_Imperial_1_200ad 0.680 0.0828 8.21
2 Greek_Cypriot Levant_BA_1900_1500_BC_Sidon 0.268 0.0654 4.10
3 Greek_Cypriot Russia_Sunghir_Medieval.SG 0.0523 0.0224 2.33
-------------------------------------------------------------------------------------------
right = c('Mbuti.DG', 'Russia_Ust_Ishim.DG', 'Russia_DevilsCave_N.SG', 'Russia_MA1_HG.SG', 'Czech_Vestonice16', 'Morocco_Iberomaurusian', 'Serbia_IronGates_Mesolithic', 'Russia_Samara_EBA_Yamnaya', 'Anatolia_Neolithic_6000_BC', 'Jordan_PPNB', 'Iran_GanjDareh_N', 'Croatia_MBA', 'Levant_BA_1900_1500_BC', 'Turkey_Alalakh_MLBA', 'Mycenaean_Greek_1500_1050_BC', 'Minoan_Crete_2600_1700_BC', 'Anatolia_Central_Gordion_780_544BC', 'Turkey_Hellenistic_Halikarnassos', 'Latvia_BA', 'Russia_IA_Ingria.SG', 'Albania_1500_400_BC', 'North_Macedonia_500_100_BC')
left = c('Aegean_Imperial_1_200ad', 'Levant_BA_1900_1500_BC_Sidon', 'Russia_Sunghir_Medieval.SG')
target = c('Greek_Cypriot')
results = qpadm(prefix, left, right, target, allsnps = TRUE)
results$weights
results$popdrop
-------------------------------------------------------------------------------------------
P 0.0386
target left weight se z
<chr> <chr> <dbl> <dbl> <dbl>
1 Greek_Cypriot Aegean_Imperial_1_200ad 0.725 0.0863 8.40
2 Greek_Cypriot Levant_BA_1900_1500_BC_Sidon 0.237 0.0676 3.50
3 Greek_Cypriot Russia_Sunghir_Medieval.SG 0.0384 0.0232 1.66
-------------------------------------------------------------------------------------------
The imperial samples i used.
Code:
ITA_Rome_Imperial:R66,0.111547,0.158423,-0.033187,-0.06783,0.002154,-0.026216,0.00094,-0.002538,-0.013703,0.025331,0.012991,-0.004196,-0.001041,0.00523,-0.022937,-0.014983,-0.005867,0.000507,0.004902,-0.015257,-0.005241,0.00272,-0.003451,0.00253,0.000958
ITA_Rome_Imperial:R69,0.120652,0.146236,-0.016593,-0.05168,0.004308,-0.019522,-0.0047,-0.007846,-0.021884,0.027882,0.000325,0.01079,-0.014271,-0.003853,-0.020087,0.007558,0.034161,0.003421,0.010559,0.006003,-0.008111,0.001855,-0.005916,-0.005422,-0.007185
ITA_Rome_Imperial:R71,0.10927,0.158423,-0.044123,-0.068153,-0.003693,-0.029841,0.001645,-0.00923,-0.013294,0.022051,0.001949,0.002698,-0.014123,0.003853,-0.020087,-0.011005,0.009648,0.002407,0.002137,0.005503,-0.004866,-0.00643,0.002588,0.007591,-0.003473
ITA_Rome_Imperial:R72,0.113823,0.145221,-0.033564,-0.073321,-0.003693,-0.030957,0.008695,-0.008538,-0.005931,0.028976,0.009256,0.005545,0.002676,0.002202,-0.010315,-0.002254,0.007432,0.002027,0.005908,-0.002501,0.000749,0.002968,-0.008504,-0.001566,0.006107
ITA_Rome_Imperial:R75,0.099026,0.153345,-0.037335,-0.070737,-0.002462,-0.029841,0.005875,-0.011769,-0.001227,0.016948,0.00682,0.002698,-0.005649,0.007569,-0.019137,0.002254,0.001695,0.000253,-0.001383,-0.007629,0.003619,-0.002102,-0.00493,-0.005181,0.008622
ITA_Rome_Imperial:R76,0.095611,0.142174,-0.042992,-0.064923,-0.011079,-0.015618,-0.006815,-0.007384,-0.007976,0.010934,0.004547,0.001349,0.005798,-0.009909,-0.012079,0.00358,0.026729,-0.008108,-0.002388,0.007003,-0.005116,0.004575,-0.003944,0.008073,-0.000359
ITA_Rome_Imperial:R78,0.113823,0.157407,-0.031301,-0.079458,0.002154,-0.03012,-0.000705,-0.007846,-0.007772,0.019317,0.002436,0.005095,-0.009366,0.008395,-0.013436,-0.017369,-0.002217,0.000253,0.010936,-0.006503,-0.007237,-0.000989,-0.006286,-0.000482,0.005389
ITA_Rome_Imperial:R81,0.108132,0.15436,-0.026398,-0.063308,0.005232,-0.027052,0.000705,0.008307,-0.001432,0.025149,0.005521,-0.003897,-0.002825,-0.005367,-0.010315,-0.001989,0.012126,0.004307,0.008422,0.001501,-0.010856,0.001484,0.00419,-0.001205,-0.001197
ITA_Rome_Imperial:R50,0.100164,0.150298,-0.024136,-0.049742,0.008309,-0.009203,0.00141,-0.000692,-0.005113,0.014214,0.000974,0.002997,0.00223,0.005092,-0.003257,-0.012198,-0.009648,0.007601,0.006159,-0.008379,0,0.007419,0.001972,0.000602,0.001557
ITA_Rome_Imperial:R38,0.102441,0.157407,-0.0445,-0.08075,-0.017542,-0.031236,-0.00423,-0.008538,-0.013908,0.016766,0.002598,-0.001049,-0.003271,0.006744,-0.007736,-0.010475,-0.011083,0.001014,0.004902,-0.004252,0.001497,0.003462,-0.001232,-0.00012,-0.001796
ITA_Rome_Imperial:R39,0.111547,0.142174,-0.022627,-0.065892,0.002462,-0.020638,-0.00141,-0.006923,-0.004295,0.028064,0.007795,0.004796,-0.005798,0.000138,-0.013843,0.000796,0.006519,0.001394,-0.000628,0.004002,-0.00262,0.000989,-0.00037,-0.006386,-0.000838
ITA_Rome_Imperial:R40,0.105855,0.151314,-0.023004,-0.060078,0.001539,-0.013666,-0.00141,-0.004846,-0.012067,0.027882,0.007307,0.003447,-0.010555,0.000275,-0.017236,-0.000796,0.000261,-0.00076,-0.002388,-0.01113,-0.004742,0.000371,-0.013188,0.004338,-0.000359
ITA_Rome_Imperial:R41,0.095611,0.139128,-0.036204,-0.076551,0.004924,-0.026216,-0.00282,-0.005769,0.002863,0.023508,0.003248,-0.001199,0.001635,0.004404,-0.006379,0.000796,0.002347,-0.003294,-0.001634,-0.005503,-0.005989,0.000866,0.00037,-0.001205,0.003952
ITA_Rome_Imperial:R43,0.111547,0.153345,-0.032809,-0.067184,0.003693,-0.025379,0.00423,-0.006,-0.007976,0.029704,0.003248,0.011839,-0.014717,0.006881,-0.017101,-0.000663,0.017341,0.003167,0.005028,-0.000625,-0.010981,0.010881,-0.003204,0.010001,-0.00012
ITA_Rome_Imperial:R436,0.119514,0.145221,-0.016216,-0.044897,0.00954,-0.015897,-0.00376,-0.008307,0.001841,0.014214,0.003573,0.005695,-0.004162,-0.011285,-0.011536,0.00716,0.02021,0,0.00352,0.001626,-0.000873,0.010881,0.001109,0.003615,-0.000479
ITA_Rome_Imperial:R44,0.117238,0.167562,-0.028284,-0.070737,0.004616,-0.019522,0.001175,-0.006692,-0.003886,0.034807,0.006333,0.008243,-0.013379,0.001651,-0.009229,-0.004508,0.017211,-0.00038,-0.003268,-0.007003,-0.000873,0.000618,0.001479,0.008314,0.001437
ITA_Rome_Imperial:R1545,0.105855,0.153345,-0.032809,-0.065569,0.001231,-0.016733,-0.00141,-0.000923,-0.006136,0.019864,0.002436,0.003597,-0.007136,-0.000275,-0.015472,-0.015911,-0.008214,-0.002027,0.005028,-0.007629,0.000499,0.011747,-0.005176,0.005784,-0.007065
ITA_Rome_Imperial:R1548,0.112685,0.146236,-0.012822,-0.044574,-0.004616,-0.021196,0.004935,0.000231,-0.005113,0.012392,-0.003248,-0.003297,-0.000892,-0.003303,-0.006515,0.006364,-0.000261,0.007475,0.002137,-0.00988,-0.013726,0.004822,0.008627,0.006025,-0.005149
ITA_Rome_Imperial:R128,0.118376,0.150298,-0.033187,-0.052326,-0.006463,-0.022311,0.001175,-0.011538,-0.018612,0.018953,0.005034,0.006294,-0.007433,0.014588,-0.019137,-0.012994,-0.007171,0.004561,0.003897,-0.013256,-0.003244,0.000618,0.005423,-0.000361,-0.008622
ITA_Rome_Imperial:R126,0.101303,0.150298,-0.038466,-0.074936,-0.005847,-0.020917,-0.00235,-0.007154,-0.003681,0.027882,0.004872,0.002698,-0.000892,0.001514,-0.009772,-0.003447,0.00665,-0.006968,0.002263,-0.009004,-0.004367,0.003091,-0.003328,0.003615,-0.00012
ITA_Rome_Imperial:R123,0.10927,0.146236,-0.032432,-0.056202,0.008617,-0.030957,0.009635,-0.007615,-0.011862,0.025331,0.007307,0.006444,-0.007284,-0.000413,-0.012486,0.009944,0.015385,-0.005068,-0.004148,-0.010505,0.000499,0.003586,-0.004807,0.001807,0.001197
ITA_Rome_Imperial:R114,0.112685,0.146236,-0.018102,-0.051357,0.007078,-0.010319,-0.005405,-0.010384,0.000614,0.008565,-0.00341,0.01094,-0.003865,0.001376,-0.006107,-0.013789,-0.009648,0.005194,0.003897,-0.007504,-0.004367,0.006677,0.006532,0.003976,-0.000239
ITA_Rome_Imperial:R115,0.105855,0.145221,-0.02225,-0.065892,-0.001846,-0.01255,0.00188,0.002538,-0.00225,0.019317,0.002598,0.006294,-0.005054,0.001927,-0.011401,-0.001724,0.009127,-0.000253,0.003645,-0.011631,-0.007112,0.004328,-0.003821,0.004699,-0.003952
My qpAdm .ind file if you want to check the sample ID's
https://www.mediafire.com/file/w2icozps2prs847/v54.1_HO_public.ind/file
G25 calculator coordinates:
(You are not supposed to use them all at the same time in every model, to avoid overfits)
Code:
0.Mycenaean_Greek_1350bc,0.1168583,0.1615369,-0.0058076,-0.0628773,0.0249687,-0.0261414,-0.0013631,-0.0052459,0.0069129,0.0428376,0.0066904,0.0106906,-0.017542,-0.0000091,-0.0188199,-0.0084416,0.0124039,0.0023565,0.0093184,-0.0054525,-0.0077447,0.0029513,-0.0023169,0.0010363,-0.0007903
8.South_Slavic_MNE_Doclea_Bjelovine,0.1261538,0.1409895,0.0422375,0.016796,0.0282102,0.0101332,0.0027025,0.0046537,-0.0020453,0.0018832,-0.0036267,-0.0018983,-0.001115,0.0106197,-0.0118078,-0.0003758,0.0085837,0.0021747,0.005866,-0.0023762,-0.0059478,-0.0017723,0.0012532,-0.0013253,-0.0015368
1.Italy_Rome_Republic_900-600bc,0.1286202,0.1535484,0.037863,-0.015827,0.0448698,-0.0064146,0.001598,-0.0025382,0.0229068,0.0411488,-0.000812,0.0125588,-0.0214072,-0.0092484,-0.0055102,0.0001326,0.0079272,0.0023818,0.007542,-0.0002752,-0.001123,0.0032396,-0.00106,-0.0052296,-0.0036882
0.Antiquity_Greek(Aegean-West_Anatolia)1-200AD,0.1087752,0.1504308,-0.0297105,-0.0637433,0.0003746,-0.021996,0.0003167,-0.0056285,-0.0070783,0.0216544,0.0041091,0.0038183,-0.0051902,0.0016276,-0.0128522,-0.003724,0.005771,0.0007271,0.0029349,-0.0048936,-0.0040634,0.0032364,-0.0015594,0.0021323,-0.0005102
1.Balkan-NorthEast_Italy_HRV_ALB_anc:ALB_Cinamak_Anc,0.1239044,0.1531999,0.0288229,-0.0124586,0.0291481,-0.0053786,0.001175,0.0003956,-0.000292,0.0241073,0.0025981,0.0065729,-0.0183066,-0.0076479,-0.0091901,-0.0024623,0.0109894,0.0014116,0.0047407,-0.0086647,-0.005633,0.0017666,-0.0033629,0.006593,-0.0054743
1.Balkan-NorthEast_Italy_HRV_ALB_anc:HRV_Anc,0.1229285,0.1472515,0.0367695,-0.0001615,0.0344675,0.004044,-0.0015275,0.0001155,0.0017385,0.023326,-0.0051965,0.0097415,-0.0159065,-0.016859,-0.0041395,0.0043095,0.0215785,-0.0039275,0.005091,-0.0023135,-0.000187,0.003895,-0.001171,0.010363,-0.006287
2.Anatolia_Center_Phrygian_650BC,0.112116,0.1502985,-0.0352605,-0.0734825,-0.008771,-0.0262155,0.00188,-0.0084225,-0.0191225,0.016401,0.0060895,0.004571,-0.0077305,0.000757,-0.011672,-0.007359,0.009192,-0.0003165,0.0050905,-0.000688,-0.001123,0.0052555,-0.003574,0.0025905,0.0037125
3.Levant_Sidon_1800BC,0.0812696,0.1468454,-0.0613196,-0.0979336,-0.0105248,-0.0389334,-0.0047942,-0.0065998,0.0114534,0.0101686,0.0104904,-0.0097712,0.0215854,0.005505,-0.0075734,0.0065234,-0.0001562,-0.0011906,0.0015086,0.004252,0.0042674,0.007543,-0.0012572,0.0015906,-0.0005028
5.Armenia_Aghitu_20BC,0.106614,0.133373,-0.0569453,-0.0498497,-0.033442,-0.0116203,0.001175,-0.0043073,-0.0338827,-0.0089293,0.007903,-0.0019483,-0.0030227,-0.00211,-0.001131,-0.0111817,-0.0073017,-0.000211,0.001173,-0.0032517,0.005116,0.000247,-0.003985,-0.0049803,0.005708
5.Caucasus_BlackSea_Samsun_B_150BC,0.106994,0.131003,-0.065242,-0.029716,-0.047393,-0.000558,0.004465,-0.005307,-0.06463,-0.027335,-0.001624,0.012739,-0.026908,0.00812,0.003257,-0.032617,0.005867,-0.013682,-0.005154,0.016133,0.013601,0.004081,0.004314,-0.016147,-0.007784
8.Germanic_Langobardic_550AD:Collegno+szolad,0.1325522,0.1322035,0.0656531,0.0600193,0.0384686,0.0196238,0.0060246,0.009608,0.002566,-0.0054341,-0.0055065,0.0031064,-0.0101088,-0.0064433,0.024331,0.0029049,-0.0108337,0.002384,0.0057935,0.0038996,0.0086437,0.0070144,0.0006722,0.0153362,0.0009362
8.Slavic_RUS_Sunghir_1100AD,0.129758,0.116786,0.070899,0.060078,0.041238,0.018965,0.009165,0.011307,0.001432,-0.017859,0.000487,-0.008093,0.014271,0.023809,-0.014658,-0.005834,0.00013,-0.002154,0.000628,-0.001251,-0.007986,-0.005812,0.012695,-0.010724,-0.005868
9.North_African_Guanche,-0.0393828,0.1314096,-0.0023384,-0.0687344,0.0337292,-0.0363672,-0.0299874,0.008261,0.0708878,0.0305428,0.0075674,-0.0059948,0.0182554,-0.0176982,0.0232082,-0.0130468,0.0031814,-0.019206,-0.044321,0.010405,-0.0134762,-0.0377142,0.0232692,-0.0011806,0.0046224
9.Turkic_Oghuz_ROU_Ploiesti_1000AD,0.078538,-0.177718,0.06675,0.028747,-0.053856,-0.006693,0.012691,0.014307,-0.007567,-0.011845,-0.007795,-0.005245,0.001784,-0.01913,0.001086,-0.008221,-0.001304,0.005321,0.00176,0.005002,-0.015473,0.009027,-0.007641,-0.000723,0.005029
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