K7b Genetics of Ice Age Europe (Dodecad K7b)

[Jovialis]

I have the coordinates for 32 of the 39 samples from Fu et al. 2016 in Dodecad K7b format below. The ones that could not process didn't have enough SNPs for the calculator to run:

[FONT=Verdana,Arial,Tahoma,Calibri,Geneva,sans-serif]AfontovaGora3,13.35,20.29,16.2,2.55,0,47.6,0
BerryAuBac,0.71,0,2.32,3.22,0,93.74,0
Bockstein,0,0,0,1.8,0,98.2,0
Brillenhohle,18.42,0,0,13.92,2,62.31,3.34
Burkhardtshohle,18.05,1.93,6.61,2.04,5.67,59.42,6.26
Cioclovina1,12.25,0,11.45,13.12,6.73,54.81,1.64
Continenza,0,0,0,3.99,0,96.01,0
ElMiron,9.78,0,1.17,3.41,0,79.24,6.41
Falkenstein,7.32,0,1.43,3.07,0,88.18,0
GoyetQ56-16,15.68,0,0,0,5.26,78.75,0.32
HohleFels49,15.84,0,8.28,8.03,0,67.85,0
HohleFels79,14.57,0,4.95,3.35,0,68.79,8.34
Iboussieres39,6.22,0,4.5,2,0,87.29,0
Kostenki12,10.57,9.82,0,5.2,18.15,41.39,14.87
Kostenki14,19.75,10.27,3.88,7.17,10.81,41.92,6.2
KremsWA3,21.28,0,5.02,3.92,19.13,46.91,3.75
LesCloseaux13,0,0,0,8.6,0,84.47,6.93
Motala12,0,0,0,32.55,0,67.45,0
Muierii2,14.26,0.51,4.91,6.67,14.6,50.09,8.97
Ofnet,0,0,0,6.2,0,93.8,0
Ostuni1,15.31,0,2.34,5.8,11.88,56.36,8.31
Ostuni2,18.08,0.14,10.48,5.79,0,60.17,5.33
Paglicci108,0,9.09,16.91,2.56,17.84,36.78,16.84
Paglicci133,15.04,0,5.36,8.89,17.83,52.54,0.35
Pavlov1,11.81,0,8.46,7.12,3.82,66.46,2.34
Ranchot88,0.82,0,0.04,2.65,0,95.57,0.92
Rigney1,11.34,0,3.11,5.7,2.05,71.6,6.2
Vestonice13,18.4,2.56,7.96,4.16,7.9,53.43,5.59
Vestonice15,9.81,0,6.84,10.94,0.08,62.7,9.64
Vestonice16,16.62,0,6.71,6.85,9.05,55.76,5.02
Vestonice43,9.58,0,0.13,4.89,13.41,63.56,8.43
Villabruna,0,0,0,4.03,0,94.59,1.38
[/FONT]

 

[Jovialis]

[FONT=Verdana,Arial,Tahoma,Calibri,Geneva,sans-serif]

In my spare time I am going to re-run the others samples from various studies I have in Combine Raw data format for Dodecad K7b
[/FONT]

 

[Salento]

... thanks Jovialis ... for the Ice Age Europe Dodecad K7

 

[Duarte]

[TABLE="class: distances"]
[TR]
[TH="align: right"]Distance to:[/TH]
[TH="align: left"]Duarte[/TH]
[/TR]
[TR]
[TD="bgcolor: #FF00C5, align: right"]20.78145086[/TD]
[TD]Paglicci133[/TD]
[/TR]
[TR]
[TD="bgcolor: #FF00D3, align: right"]21.21561689[/TD]
[TD]Vestonice43[/TD]
[/TR]
[TR]
[TD="bgcolor: #E700FF, align: right"]23.20405783[/TD]
[TD]Muierii2[/TD]
[/TR]
[TR]
[TD="bgcolor: #C600FF, align: right"]24.17686911[/TD]
[TD]Ostuni1[/TD]
[/TR]
[TR]
[TD="bgcolor: #C200FF, align: right"]24.30084772[/TD]
[TD]Kostenki12[/TD]
[/TR]
[TR]
[TD="bgcolor: #6E00FF, align: right"]26.75601428[/TD]
[TD]KremsWA3[/TD]
[/TR]
[TR]
[TD="bgcolor: #6A00FF, align: right"]26.87075176[/TD]
[TD]Vestonice16[/TD]
[/TR]
[TR]
[TD="bgcolor: #3B00FF, align: right"]28.26028662[/TD]
[TD]Cioclovina1[/TD]
[/TR]
[TR]
[TD="bgcolor: #2C00FF, align: right"]28.70871296[/TD]
[TD]Vestonice13[/TD]
[/TR]
[TR]
[TD="bgcolor: #0800FF, align: right"]29.77642020[/TD]
[TD]Kostenki14[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]30.18135848[/TD]
[TD]Burkhardtshohle[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]30.20938761[/TD]
[TD]Pavlov1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]31.62814253[/TD]
[TD]Paglicci108[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]32.42476060[/TD]
[TD]Vestonice15[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]32.81681276[/TD]
[TD]Rigney1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]33.38833778[/TD]
[TD]Brillenhohle[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]35.18196413[/TD]
[TD]HohleFels79[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]35.24552738[/TD]
[TD]HohleFels49[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]35.37978943[/TD]
[TD]Ostuni2[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]36.45630124[/TD]
[TD]GoyetQ56-16[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]37.03402625[/TD]
[TD]AfontovaGora3[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]37.99976710[/TD]
[TD]ElMiron[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]39.73925012[/TD]
[TD]Motala12[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]40.14848191[/TD]
[TD]LesCloseaux13[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]42.75168184[/TD]
[TD]Iboussieres39

[/TD]
[/TR]
[/TABLE]

 

[g p]

View attachment 12185

My results using your coordinates ..

 

[Angela]

There's something wrong.

We can't be this close to such ancient samples.

[TABLE="class: distances"]
[TR]
[TD="bgcolor: #8000FF, align: right"]26.23926066[/TD]
[TD]Kostenki12[/TD]
[/TR]
[TR]
[TD="bgcolor: #6700FF, align: right"]26.96624371[/TD]
[TD]Paglicci133[/TD]
[/TR]
[TR]
[TD="bgcolor: #2D00FF, align: right"]28.67532040[/TD]
[TD]Vestonice43[/TD]
[/TR]
[TR]
[TD="bgcolor: #2600FF, align: right"]28.89698427[/TD]
[TD]Muierii2[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]30.12086818[/TD]
[TD]KremsWA3[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]30.60622159[/TD]
[TD]Ostuni1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]32.38518488[/TD]
[TD]Kostenki14[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]32.41532662[/TD]
[TD]Paglicci108[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]33.16711474[/TD]
[TD]Vestonice16[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]33.65820554[/TD]
[TD]Vestonice13[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]35.46176815[/TD]
[TD]Burkhardtshohle[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]35.57684640[/TD]
[TD]Cioclovina1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]37.41129108[/TD]
[TD]Pavlov1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]38.28865498[/TD]
[TD]AfontovaGora3[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]40.04360373[/TD]
[TD]Rigney1[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]40.24132577[/TD]
[TD]Vestonice15[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]41.05892717[/TD]
[TD]Brillenhohle[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]41.49117135[/TD]
[TD]Ostuni2[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]41.70178174[/TD]
[TD]HohleFels79[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]42.15438767[/TD]
[TD]HohleFels49[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]42.18134540[/TD]
[TD]GoyetQ56-16[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]44.79107165[/TD]
[TD]ElMiron[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]47.73073224[/TD]
[TD]LesCloseaux13[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]49.02541688[/TD]
[TD]Iboussieres39[/TD]
[/TR]
[TR]
[TD="bgcolor: #0000FF, align: right"]49.40637611[/TD]
[TD]Motala12[/TD]
[/TR]
[/TABLE]

Although, old Kostenki is mtDna U2.

 

[Jovialis]

^^K7b probably doesn't have the right modeling for these prehistoric samples. These fall outside of the modern genetic continuums, while K7b tries to analyze them with modern populations.

In older versions of Admixture Studio, the program would just crash-to-desktop, when trying to run them.

Basically, it is trying to frame something that exists outside of the frame.

 

[Palermo Trapani]

Ice Age Dodecad K7, Plain text format. Thanks Jovialis:

Distance to: PalermoTrapani


30.37173522 Kostenki12
34.04720106 Paglicci108
37.15540741 Kostenki14
38.83246322 KremsWA3
38.93737793 Paglicci133
39.62980949 Muierii2
43.75587618 Ostuni1
43.82855690 AfontovaGora3
44.85228088 Vestonice43
44.93691912 Vestonice13
45.74911365 Vestonice16
47.41512311 Cioclovina1
48.73420462 Burkhardtshohle
52.86207904 Pavlov1
54.09555065 Vestonice15
54.39139454 Brillenhohle
54.39298116 Ostuni2
56.39929166 Rigney1
57.03865444 HohleFels79
57.10440526 HohleFels49
59.66541880 GoyetQ56-16
62.07405577 ElMiron
62.22560486 Motala12
65.43629803 LesCloseaux13
67.18006103 Iboussieres39

[TH="class: singleheader, colspan: 2, align: left"]Target: PalermoTrapni
Distance: 30.0131% / 30.01311788 | ADC: 0.25x

[/TH]

[TD="class: singleleftcolumn, align: right"]79.2[/TD]
[TD="class: singlerightcolumn"]Kostenki12[/TD]

[TD="class: barchartmode1 nonselectable, colspan: 2"][/TD]

[TD="class: singleleftcolumn, align: right"]20.8[/TD]
[TD="class: singlerightcolumn"]Paglicci108[/TD]