@Angela
I found a comment which might explain why the Allenloft conclusions and methods are slightly off.
So the analyses might have started before Haak published the EHG results.
That might be it. It just made no sense to me to be using Mal'ta to model people who lived tens of thousands of years later, and to be so dogmatic when they don't have a Maykop sample, much less an early near eastern farmer.
Rushing to get into print isn't helpful.
Have you seen these?
[FONT="]RISE416.txt[/FONT]
[FONT="]Dodecad K12b[/FONT]
[FONT="] [/FONT]
[FONT="] 12 ancestral populations[/FONT]
[FONT="] 166770 total SNPs[/FONT]
[FONT="] 523 flipped SNPs[/FONT]
[FONT="] 2 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls [/FONT]
[FONT="] 163733 absent SNPs[/FONT]
[FONT="] 0.018211 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]163733 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 23.69% Gedrosia [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% Northwest_African [/FONT]
[FONT="] 0.00% Southeast_Asian [/FONT]
[FONT="] 33.20% Atlantic_Med [/FONT]
[FONT="] 19.53% North_European [/FONT]
[FONT="] 0.00% South_Asian [/FONT]
[FONT="] 0.00% East_African [/FONT]
[FONT="] 0.00% Southwest_Asian [/FONT]
[FONT="] 0.00% East_Asian [/FONT]
[FONT="] 23.57% Caucasus [/FONT]
[FONT="] 0.00% Sub_Saharan [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="]Eurogenes K7[/FONT]
[FONT="] [/FONT]
[FONT="] 7 ancestral populations[/FONT]
[FONT="] 229157 total SNPs[/FONT]
[FONT="] 18 flipped SNPs[/FONT]
[FONT="] 2 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 225068 absent SNPs[/FONT]
[FONT="] 0.017844 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]225068 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 11.03% ANE [/FONT]
[FONT="] 0.00% ASE [/FONT]
[FONT="] 44.71% WHG-UHG [/FONT]
[FONT="] 0.00% East_Eurasian [/FONT]
[FONT="] 2.64% West_African [/FONT]
[FONT="] 0.00% East_African [/FONT]
[FONT="] 41.61% ENF [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="]Eurogenes Steppe K10[/FONT]
[FONT="] [/FONT]
[FONT="] 10 ancestral populations[/FONT]
[FONT="] 101647 total SNPs[/FONT]
[FONT="] 1 flipped SNPs[/FONT]
[FONT="] 0 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 99765 absent SNPs[/FONT]
[FONT="] 0.018515 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="] 99765 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 33.27% Near_Eastern [/FONT]
[FONT="] 0.00% East_Asian [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% Oceanian [/FONT]
[FONT="] 25.74% WHG-UHG [/FONT]
[FONT="] 1.64% Sub-Saharan [/FONT]
[FONT="] 25.85% Hindu_Kush [/FONT]
[FONT="] 13.51% Steppe [/FONT]
[FONT="] 0.00% Amerindian [/FONT]
[FONT="] 0.00% Southeast_Asian [/FONT]
[FONT="] [/FONT]
[FONT="]HarappaWorld[/FONT]
[FONT="] [/FONT]
[FONT="] 16 ancestral populations[/FONT]
[FONT="] 188173 total SNPs[/FONT]
[FONT="] 1 flipped SNPs[/FONT]
[FONT="] 1 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 184719 absent SNPs[/FONT]
[FONT="] 0.018355 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]184719 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 0.00% S-Indian [/FONT]
[FONT="] 22.02% Baloch [/FONT]
[FONT="] 29.76% Caucasian [/FONT]
[FONT="] 20.04% NE-Euro [/FONT]
[FONT="] 0.00% SE-Asian [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% NE-Asian [/FONT]
[FONT="] 0.00% Papuan [/FONT]
[FONT="] 0.00% American [/FONT]
[FONT="] 0.00% Beringian [/FONT]
[FONT="] 26.41% Mediterranean [/FONT]
[FONT="] 0.00% SW-Asian [/FONT]
[FONT="] 0.00% San [/FONT]
[FONT="] 0.00% E-African [/FONT]
[FONT="] 0.00% Pygmy [/FONT]
[FONT="] 1.77% W-African [/FONT]
[FONT="]RISE416.txt[/FONT]
[FONT="]Dodecad K12b[/FONT]
[FONT="] [/FONT]
[FONT="] 12 ancestral populations[/FONT]
[FONT="] 166770 total SNPs[/FONT]
[FONT="] 523 flipped SNPs[/FONT]
[FONT="] 2 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 163733 absent SNPs[/FONT]
[FONT="] 0.018211 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]163733 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 23.69% Gedrosia [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% Northwest_African [/FONT]
[FONT="] 0.00% Southeast_Asian [/FONT]
[FONT="] 33.20% Atlantic_Med [/FONT]
[FONT="] 19.53% North_European [/FONT]
[FONT="] 0.00% South_Asian [/FONT]
[FONT="] 0.00% East_African [/FONT]
[FONT="] 0.00% Southwest_Asian [/FONT]
[FONT="] 0.00% East_Asian [/FONT]
[FONT="] 23.57% Caucasus [/FONT]
[FONT="] 0.00% Sub_Saharan [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="]Eurogenes K7[/FONT]
[FONT="] [/FONT]
[FONT="] 7 ancestral populations[/FONT]
[FONT="] 229157 total SNPs[/FONT]
[FONT="] 18 flipped SNPs[/FONT]
[FONT="] 2 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 225068 absent SNPs[/FONT]
[FONT="] 0.017844 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]225068 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 11.03% ANE [/FONT]
[FONT="] 0.00% ASE [/FONT]
[FONT="] 44.71% WHG-UHG [/FONT]
[FONT="] 0.00% East_Eurasian [/FONT]
[FONT="] 2.64% West_African [/FONT]
[FONT="] 0.00% East_African [/FONT]
[FONT="] 41.61% ENF [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="] [/FONT]
[FONT="]Eurogenes Steppe K10[/FONT]
[FONT="] [/FONT]
[FONT="] 10 ancestral populations[/FONT]
[FONT="] 101647 total SNPs[/FONT]
[FONT="] 1 flipped SNPs[/FONT]
[FONT="] 0 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 99765 absent SNPs[/FONT]
[FONT="] 0.018515 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="] 99765 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 33.27% Near_Eastern [/FONT]
[FONT="] 0.00% East_Asian [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% Oceanian [/FONT]
[FONT="] 25.74% WHG-UHG [/FONT]
[FONT="] 1.64% Sub-Saharan [/FONT]
[FONT="] 25.85% Hindu_Kush [/FONT]
[FONT="] 13.51% Steppe [/FONT]
[FONT="] 0.00% Amerindian [/FONT]
[FONT="] 0.00% Southeast_Asian [/FONT]
[FONT="] [/FONT]
[FONT="]HarappaWorld[/FONT]
[FONT="] [/FONT]
[FONT="] 16 ancestral populations[/FONT]
[FONT="] 188173 total SNPs[/FONT]
[FONT="] 1 flipped SNPs[/FONT]
[FONT="] 1 heterozygous SNPs[/FONT]
[FONT="] 0 no-calls[/FONT]
[FONT="] 184719 absent SNPs[/FONT]
[FONT="] 0.018355 genotype rate[/FONT]
[FONT="] mode genomewide[/FONT]
[FONT="] [/FONT]
[FONT="]184719 SNPs missing (no-call or absent)[/FONT]
[FONT="] [/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] FINAL ADMIXTURE PROPORTIONS:[/FONT]
[FONT="] ----------------------------[/FONT]
[FONT="] [/FONT]
[FONT="] 0.00% S-Indian [/FONT]
[FONT="] 22.02% Baloch [/FONT]
[FONT="] 29.76% Caucasian [/FONT]
[FONT="] 20.04% NE-Euro [/FONT]
[FONT="] 0.00% SE-Asian [/FONT]
[FONT="] 0.00% Siberian [/FONT]
[FONT="] 0.00% NE-Asian [/FONT]
[FONT="] 0.00% Papuan [/FONT]
[FONT="] 0.00% American [/FONT]
[FONT="] 0.00% Beringian [/FONT]
[FONT="] 26.41% Mediterranean [/FONT]
[FONT="] 0.00% SW-Asian [/FONT]
[FONT="] 0.00% San [/FONT]
[FONT="] 0.00% E-African [/FONT]
[FONT="] 0.00% Pygmy [/FONT]
[FONT="] 1.77% W-African [/FONT]